View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_23 (Length: 269)
Name: NF6879_low_23
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 30364666 - 30364410
Alignment:
| Q |
1 |
acagcttcaagatctgtctccatgaattcaaacacaagatgcaaattccctttatgtgggaagcaatcaatcaactcaattatattgggatctttgagct |
100 |
Q |
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| T |
30364666 |
acagcttcaagatctgtctccatgaattcaaacacaagatgcaaattccctttatgtgggaagcaatcaatcaactcaattatattgggatctttgagct |
30364567 |
T |
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| Q |
101 |
ctttaagcagtttaatttctctaagagcagtaaaattcaccccttctttctgttttccgattcgaatcttcttaatagcaaccgtctgtcccgtctgtcc |
200 |
Q |
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| T |
30364566 |
ctttaagcagtttaatttctctaagagcagtaaaattcaccccttctttctgttttccgattcgaatcttcttaatagcaaccgtctgtcccgtctgtcc |
30364467 |
T |
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| Q |
201 |
atgaaataaatatatctttgtaaggaccacatgataataatagtactattgatgtcc |
257 |
Q |
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| T |
30364466 |
atgaaataaatatatctttgtaaggaccacatgataataatagtactattgatgtcc |
30364410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 21439287 - 21439426
Alignment:
| Q |
4 |
gcttcaagatctgtctccatgaattcaaacacaagatgcaaattccctttatgtgggaagcaatcaatcaactcaattatattgggatctttgagctctt |
103 |
Q |
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| T |
21439287 |
gcttcaagatctgtctccatgaattcaaacacaagatgcaaattctgtttatattggaatacatcaatcaaatcaacaatgtttggatgtttgagctctt |
21439386 |
T |
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| Q |
104 |
taagcagtttaatttctctaagagcagtaaaattcacccc |
143 |
Q |
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| T |
21439387 |
tgagaagttttatttctctaagagctgtaaaattaacccc |
21439426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 21439452 - 21439499
Alignment:
| Q |
163 |
cgaatcttcttaatagcaaccgtctgtcccgtctgtccatgaaataaa |
210 |
Q |
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| T |
21439452 |
cgaatcttcttaattgcaaccatttgtccggtctgtccatgaaataaa |
21439499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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