View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_25 (Length: 266)
Name: NF6879_low_25
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 47309232 - 47309308
Alignment:
| Q |
174 |
gtggaactaagtttgaactaaatctgaggataatatctcattattctccttgtttcttataatttcatcggttgatg |
250 |
Q |
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| T |
47309232 |
gtggaactaagtttgaactaaatctgaggataatatctcattattctccttgtttcttataatttcatcggttgatg |
47309308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 47309072 - 47309184
Alignment:
| Q |
18 |
ctgatattccacatgtgtaannnnnnngtgattctactgttattgttgctctatatt---gtatgtccaataagagaataatgtggaggatggattaatt |
114 |
Q |
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| T |
47309072 |
ctgatattccacatgtgtaatttttt-gtgattctactgttattgttgctctatattattgtatgtccaataagagaataatgtggaggatggattaatt |
47309170 |
T |
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| Q |
115 |
taggtggttcgttg |
128 |
Q |
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| T |
47309171 |
taggtggttcgttg |
47309184 |
T |
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