View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_26 (Length: 263)
Name: NF6879_low_26
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 33391823 - 33391600
Alignment:
| Q |
19 |
tagagggtggtttacctgaagggtgtgaaaatgttgatgcaatccctacaatttccatgcttcctacattctttactgctactaaattgcttcaacaacc |
118 |
Q |
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| T |
33391823 |
tagagggtggtttacctgaagggtgtgaaaatgttgatgcaatccctacaatttccctgcttcctacattctttactgctactaaattgcttcaacaacc |
33391724 |
T |
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| Q |
119 |
ctttgaagaactattgcttcaacaaaaaccacattgcattattgctgatatgttctttccatgggcaactgattctgctacaaaatttggtattcctagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33391723 |
ctttgaagaactattgcttcaacaaaaaccacattgcattgttgctgatatgttctttccatgggcaactgattctgctacaaaatttggtattcctagg |
33391624 |
T |
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| Q |
219 |
attgtattccatgccactggtttc |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
33391623 |
attgtattccatgccactggtttc |
33391600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 18988766 - 18988985
Alignment:
| Q |
19 |
tagagggtggtttacctgaagggtgtgaaaatgttgatgcaatccctacaatttccatgcttcctacattctttactgctactaaattgcttcaacaacc |
118 |
Q |
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| T |
18988766 |
tagagggtggtttaccttatggctgtgaaaatgttaatgcaatccctacagtttccctggttcctacattctttactgctactacattgctttaacaacc |
18988865 |
T |
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| Q |
119 |
ctttgaagaactattgcttcaacaaaaaccacattgcattattgctgatatgttctttccatgggcaactgattctgctacaaaatttggtattcctagg |
218 |
Q |
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| T |
18988866 |
ctttgaagaactactgcttcaacaaaaaccacattgcattgttgctgatatgttctttccacgggcaactgattctgcagcaaaagttggtattcctacg |
18988965 |
T |
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| Q |
219 |
attgtattccatgccactgg |
238 |
Q |
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| T |
18988966 |
attgtattccatgctactgg |
18988985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 27689591 - 27689376
Alignment:
| Q |
27 |
ggtttacctgaagggtgtgaaaatgttgatgcaatccctacaatttccatgcttcctacattctttactgctactaaattgcttcaacaaccctttgaag |
126 |
Q |
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|||||||||||||| ||||| ||||||||| |||||||| || ||||| | ||||| |||||||| |||||| || |||||| |||||||||||||||| |
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| T |
27689591 |
ggtttacctgaaggatgtgagaatgttgattcaatcccttcagtttcctttgttcctgcattctttgctgctattagattgctacaacaaccctttgaag |
27689492 |
T |
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| Q |
127 |
aactattgcttcaacaaaaaccacattgcattattgctgatatgttctttccatgggcaactgattctgctacaaaatttggtattcctaggattgtatt |
226 |
Q |
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| T |
27689491 |
aactattgcttcagcaaaaaccacattgtgttgttgctgatatgttctttccatgggcaaccgattcggctgcaaaatttggaattcctaggattgtgtt |
27689392 |
T |
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| Q |
227 |
ccatgccactggtttc |
242 |
Q |
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||||| |||| ||||| |
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| T |
27689391 |
ccatggcactagtttc |
27689376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 19001241 - 19001324
Alignment:
| Q |
149 |
acattgcattattgctgatatgttctttccatgggcaactgattctgctacaaaatttggtattcctaggattgtattccatgc |
232 |
Q |
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|||||||||| || |||||||||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19001241 |
acattgcattgtttctgatatgttctttccataggcaacaggttctgctgcaaaatttggtattcctaggattgtattccatgc |
19001324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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