View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_28 (Length: 256)
Name: NF6879_low_28
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5485114 - 5485358
Alignment:
| Q |
1 |
catctctaataggtatcgttccttctattcttggaagatggaagctctgcaagcttcaggtcctacagctatcaaataattttcttactggtgatataac |
100 |
Q |
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| T |
5485114 |
catctctaataggtatcattccttctattcttggaagatggaagctctgcaagcttcaggttctacagctatcaaataattttcttactggtgatataac |
5485213 |
T |
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| Q |
101 |
tgaaatgatcgaggtcatgtcttgtagcaaccaaagtttggagatgttggatttgagtcaaaatcaattaactgggaaattgttccattctttagagcag |
200 |
Q |
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| T |
5485214 |
tgaaatgatcgaggtcgtgtcttggagcaaccaaagtttggagatgttggatttgagtcaaaatcaattaaatgggaaattgtcccattctttagaacag |
5485313 |
T |
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| Q |
201 |
tttaaaagtctatatgatcttgatctgtcaagcaattcagtgaac |
245 |
Q |
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| T |
5485314 |
tttaaaagtctatatgatcttgatctgtcaagcaattcagtgaac |
5485358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5495859 - 5496062
Alignment:
| Q |
1 |
catctctaataggtatcgttccttctattcttggaagatggaagctctgcaagcttcaggtcctacagctatcaaataattttcttactggtgatataac |
100 |
Q |
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| T |
5495859 |
catctctaatcggtctcgttccttctatgctaggaagatggaagctttgcaaacttcaagttctagacctatcatctaattttattactggtgatatagc |
5495958 |
T |
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| Q |
101 |
tgaaatgatcgaggtcatgtcttgtagcaaccaaagtttggagatgttggatttgagtcaaaatcaattaactgggaaattgttccattctttagagcag |
200 |
Q |
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| T |
5495959 |
tgataccattgaggccatgtcttgtagcaaccaaagtttgatgttgttggatttgagttataaccaactaactgggaaattgcctcattctttagggaag |
5496058 |
T |
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| Q |
201 |
ttta |
204 |
Q |
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|||| |
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| T |
5496059 |
ttta |
5496062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 5500891 - 5501072
Alignment:
| Q |
1 |
catctctaataggtatcgttccttctattcttggaagatggaagctctgcaagcttcaggtcctacagctatcaaataattttcttactggtgatataac |
100 |
Q |
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|||||||||||||| ||||||||||| ||| |||||||| ||||||||||||| | || |||||| ||||| ||| |||||||||||||| |
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| T |
5500891 |
catctctaataggtcaagttccttctatgtctgggagatggaacctctgcaagcttcggagtcttgtcctatcatctaattatctaactggtgatataac |
5500990 |
T |
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| Q |
101 |
tgaaatgatcgaggtcatgtcttgtagcaaccaaagtttggagatgttggatttgagtcaaaatcaattaactgggaaattg |
182 |
Q |
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| T |
5500991 |
agaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttggatttgagtcaaaatcaactaagtgggaaattg |
5501072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 5490094 - 5490240
Alignment:
| Q |
21 |
ccttctattcttggaagatggaagctctgcaagcttcaggtcctacagctatcaaataattttcttactggtgatataactgaaatgatcgaggtcatgt |
120 |
Q |
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|||||||| ||||||||||||||||||||||||||||| | ||| | | || |||||| ||||| || |||||| ||||||||||| |||| |||| |
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| T |
5490094 |
ccttctatgcttggaagatggaagctctgcaagcttcaatttctatacttgtcgtataattctcttattgctgatatgactgaaatgattgaggcaatgt |
5490193 |
T |
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| Q |
121 |
cttgtagcaaccaaagtttggagatgttggatttgagtcaaaatcaa |
167 |
Q |
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| T |
5490194 |
cttgtagcaaccaaagtctgaagagtttagatttaagtcaaaatcaa |
5490240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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