View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_29 (Length: 250)
Name: NF6879_low_29
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_29 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 30365092 - 30364847
Alignment:
| Q |
5 |
tgtcgaataatataacatagcggtggcctaccacaattaacacagattttttaacaaattccaaagttgtctacgtgcttactcccacattctgaaaggg |
104 |
Q |
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| T |
30365092 |
tgtcgaataatataacatagcggtggcctaccacaattaacacagattttctaacaaattccaaagttgtctacgtgcttactcccacattctgaaaggg |
30364993 |
T |
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| Q |
105 |
attctcatgatactaaatatgaaaaacaaacctgatgagtgaacctgcgatctgggcttccaaaaatacgcgctaaaccaaaatctgcaagtttcagttg |
204 |
Q |
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| T |
30364992 |
attctcatgatactaaatatgaaaaacaaacctgatgagtgaacctgcgatctgggcttccaaaaatacgcgctaaaccaaaatctgcaagtttcagttg |
30364893 |
T |
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| Q |
205 |
tccattaggtccgatcaacaaattatttggtttcatatccctgaaa |
250 |
Q |
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| T |
30364892 |
tccattaggtccgatcaacaaattatttggtttcatatccctgaaa |
30364847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 21438980 - 21439098
Alignment:
| Q |
128 |
aaacaaacctgatgagtgaacctgcgatctgggcttccaaaaatacgcgctaaaccaaaatctgcaagtttcagttgtccattaggtccgatcaacaaat |
227 |
Q |
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||||||||||||| || |||| | |||||||| |||||| || | | |||||||||||||||||||||||| |||||||| |||| |||||||| | |
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| T |
21438980 |
aaacaaacctgatcagggaactcgtgatctgggtctccaaatatctgtgataaaccaaaatctgcaagtttcagctgtccattttgtcctatcaacaagt |
21439079 |
T |
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| Q |
228 |
tatttggtttcatatccct |
246 |
Q |
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| T |
21439080 |
tgtttggtttcacatccct |
21439098 |
T |
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