View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_30 (Length: 240)
Name: NF6879_low_30
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34647130 - 34646906
Alignment:
| Q |
1 |
tgcttattgtggtgtattttccaacacacacatcttgttagaaatctattagataaatagacaacacacgtcacaacttcagtccaaaattctttattgg |
100 |
Q |
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| T |
34647130 |
tgcttattgtggtgtattttccaacacacacatcttgttagaaatctattagataaatagacaacacacgtcacaacttcagtccaaaattctttattgg |
34647031 |
T |
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| Q |
101 |
gttcttacttttgatcttactttgaattatttattttttctttccacggcgtcattttattaaaggaaccttagaattgtaattaatggacatttgattc |
200 |
Q |
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| T |
34647030 |
gttcttacttttgatcttactttgaattatttattttttctttccacggcatcattttattaaaggaaccttagaattgtaattaatggacatttgattc |
34646931 |
T |
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| Q |
201 |
cc--ttattcacataactcttagaa |
223 |
Q |
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| T |
34646930 |
ccttttattcacataactcttagaa |
34646906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 32973519 - 32973451
Alignment:
| Q |
27 |
cacacatcttgttagaaatctattagataaatagacaacacacgtcacaacttcagtccaaaattcttt |
95 |
Q |
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| T |
32973519 |
cacacttcttgttggagatctattagatagatagactgcacatgtcacaacttcaacccaaaattcttt |
32973451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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