View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6879_low_31 (Length: 239)

Name: NF6879_low_31
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6879_low_31
NF6879_low_31
[»] chr7 (3 HSPs)
chr7 (10-223)||(5568573-5568786)
chr7 (20-220)||(3614997-3615197)
chr7 (10-223)||(35611348-35611558)
[»] scaffold1903 (1 HSPs)
scaffold1903 (10-223)||(458-670)
[»] chr4 (3 HSPs)
chr4 (10-223)||(9981353-9981566)
chr4 (59-223)||(46355866-46356024)
chr4 (71-223)||(20855476-20855622)
[»] chr3 (2 HSPs)
chr3 (10-223)||(33130212-33130431)
chr3 (66-223)||(54670820-54670966)
[»] chr2 (1 HSPs)
chr2 (23-221)||(15480347-15480551)
[»] chr8 (1 HSPs)
chr8 (71-223)||(14735280-14735426)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 5568786 - 5568573
Alignment:
Q  10 aatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatg 109  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  5568786 aatgggtcactcactaataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttactttatgaaaaactagataaaaatg 5568687  T
Q  110 ttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5568686 ttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtaggcctatttgttt 5568587  T
Q  210 caagaggagattag 223  Q
    ||||||||||||||    
T  5568586 caagaggagattag 5568573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 3614997 - 3615197
Alignment:
Q  20 tcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaa 119  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3614997 tcactggtaactccttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaa 3615096  T
Q  120 tctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagaggaga 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  3615097 tctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtaggcctatttgtttcaagaggaga 3615196  T
Q  220 t 220  Q
    |    
T  3615197 t 3615197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 35611558 - 35611348
Alignment:
Q  10 aatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatg 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  35611558 aatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagataaaaatg 35611459  T
Q  110 ttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgttt 209  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||||||||||| || |||||||||    
T  35611458 ttcatgttaatctcataaaacaagaacaggatgaagttgttgatggtgatggtgaa---gaaggttaaacaattgatttcatgggtaaacttatttgttt 35611362  T
Q  210 caagaggagattag 223  Q
    || |||||||||||    
T  35611361 catgaggagattag 35611348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 670 - 458
Alignment:
Q  10 aatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatg 109  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||    
T  670 aatgggtcactcactgataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaacca-ataaaaatg 572  T
Q  110 ttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  571 ttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaagattaaacaattgatttcatgggtaggcatatttgttt 472  T
Q  210 caagaggagattag 223  Q
    ||||||||||||||    
T  471 caagaggagattag 458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 9981566 - 9981353
Alignment:
Q  10 aatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatg 109  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | |||||||||    
T  9981566 aatgggtcactcaccgataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaatcacataaaaatg 9981467  T
Q  110 ttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgttt 209  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9981466 ttcatgttaatctcataaaataagaacaggatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtaggcctatttgttt 9981367  T
Q  210 caagaggagattag 223  Q
    ||||||||||||||    
T  9981366 caagaggagattag 9981353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 46355866 - 46356024
Alignment:
Q  59 caaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa-gttgttgatggtg 157  Q
    |||| |||||||||| ||||| ||| |||||| |||||  ||||||||||  ||||||||||||| ||||||||||| ||||| || |||||||||        
T  46355866 caaatctttctcttttatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcgtaaaacaagaataagattaaagttgttgat---- 46355960  T
Q  158 atggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattag 223  Q
      ||||||||||| ||||||||||||||||| |||||||| ||| ||||||||| |||||||||||    
T  46355961 --ggtgaagaagatggttaaacaattgattttatgggtaggcctttttgtttcacgaggagattag 46356024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 20855476 - 20855622
Alignment:
Q  71 tttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa-gttgttgatggtgatggtgaagaag 169  Q
    ||||||||| ||| |||||| |||||  ||||||||||  |||||||||||||||||||||| || ||||| || |||||||||      ||||||||||    
T  20855476 tttcatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcataaaacaaaaataagattaaagttgttgat------ggtgaagaag 20855568  T
Q  170 aaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattag 223  Q
    | ||||||||||||||||||||| |||| ||| ||||||||| |||||||||||    
T  20855569 atggttaaacaattgatttcatgtgtaggcctttttgtttcacgaggagattag 20855622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 33130212 - 33130431
Alignment:
Q  10 aatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatg 109  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||||||| ||| || ||||    
T  33130212 aatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcctggcgtttacttcatgaaaaaccagacaacaatg 33130311  T
Q  110 ttcatgttaatctcataaaacaa------gaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctat 203  Q
    ||||| |||||||||| ||||||      ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  33130312 ttcatcttaatctcatcaaacaagaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgattttatgggtagacctat 33130411  T
Q  204 ttgtttcaagaggagattag 223  Q
    ||||||||||||||||||||    
T  33130412 ttgtttcaagaggagattag 33130431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 54670966 - 54670820
Alignment:
Q  66 ttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaa 165  Q
    |||||||||||||  |||||||||| |||||| ||||||||||  ||||||||||||||||||||||||| ||| | ||   |||||| ||             
T  54670966 ttctctttcatggtgtttacttcattaaaaaccagataaaaatagtcatgttaatctcataaaacaagaataagtttaa--agttgattgt--------- 54670878  T
Q  166 gaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattag 223  Q
    |||||| |||||||||||||||||||||||||  || ||||||||| |||||||||||    
T  54670877 gaagaaagttaaacaattgatttcatgggtagggctttttgtttcacgaggagattag 54670820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 15480551 - 15480347
Alignment:
Q  23 ctgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatct 122  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||  ||||||||||||||||| ||| || ||||||||||||||| |    
T  15480551 ctgataactctttttcattccatttgaattcaaaaccaaacccttctatttaatggtgtttacttcatgaaaaaccagacaacaatgttcatgttaatgt 15480452  T
Q  123 ca------taaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagagg 216  Q
     |      ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  15480451 taatatcttaaaacaagaacaagatgaagttgttgatggtgatggtgaagaggaaggtgaaacaattgatttcttgggtagacctatttgtttcaagagg 15480352  T
Q  217 agatt 221  Q
    |||||    
T  15480351 agatt 15480347  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 14735280 - 14735426
Alignment:
Q  71 tttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa-gttgttgatggtgatggtgaagaag 169  Q
    ||||||||| ||| |||||| |||||  |||||||||| ||||||||||||||||||||| |||| ||||| || |||||||||| |||      |||||    
T  14735280 tttcatggcgttt-cttcattaaaaatcagataaaaatattcatgttaatctcataaaaccagaataagattaaagttgttgatgatga------agaag 14735372  T
Q  170 aaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattag 223  Q
    | |||||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  14735373 atggttaaacaattgatttcatgggtaggcctttttgtttcacgaggagattag 14735426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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