View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_33 (Length: 236)
Name: NF6879_low_33
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 25940 - 25751
Alignment:
| Q |
15 |
ctgtggaagaagacaaggatgctgaacaagcctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataa |
114 |
Q |
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| T |
25940 |
ctgtggaagaagacaaggatgctgaacaagcctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataa |
25841 |
T |
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| Q |
115 |
ataatggtgtctaacacttgcgttttaacatgcatatgatttttgtgtttgtagaatgcctgtcaactttcttgtacacttttttgtgaac |
205 |
Q |
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| T |
25840 |
ataatggtgtc-agcacttgcgttttaacatgcatatgatttttgtgtttgtagaatgcctgtcaactttcttgtacacttttttgtgaac |
25751 |
T |
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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 21352527 - 21352357
Alignment:
| Q |
30 |
aggatgctgaacaagcctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaac |
129 |
Q |
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| T |
21352527 |
aggatgctgaacaagcttatgtaattatgagagactggatatttgaacatttggtgtaaaaatgaaatgttttaagactatatgaataaaggtatc-aac |
21352429 |
T |
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| Q |
130 |
acttgcgttttaacatgcatatgatttttgtgtttgtagaatgcctgtcaactttcttgtacacttttttgt |
201 |
Q |
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| T |
21352428 |
acttgcgtcttaacatgcatatgatttttgtatttgtagactgtctgtcaactttcctatacaattttttgt |
21352357 |
T |
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