View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_34 (Length: 233)
Name: NF6879_low_34
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 37840097 - 37840313
Alignment:
| Q |
1 |
tatggtgtctaatggtttagtgatcctagcaattcacatggtcaaaatgacagcatgttttataactgctctttgttgcaagatgcctgtcactgatgct |
100 |
Q |
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| T |
37840097 |
tatggtgtctaatggtttagtggtcctagcaattcacatggtcaaaatgacagcatgttttataactgctctttgttgcaagatgcctgtcactgatgct |
37840196 |
T |
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| Q |
101 |
ttctgtatttccctcattttgaacactaaaggtgtggtggaagttggcatctacaattctgcatttgacgatcaagtactgcatttaacnnnnnnnaggt |
200 |
Q |
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| T |
37840197 |
ttctgtatttccctcattttgaacactaaaggtgtggtggaagttggcatctacaattctgcatttgacgatcaagtactgcatttaactttttttaggt |
37840296 |
T |
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| Q |
201 |
ttaaatatgtttctata |
217 |
Q |
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||||||||||||||||| |
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| T |
37840297 |
ttaaatatgtttctata |
37840313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 37831995 - 37832044
Alignment:
| Q |
49 |
gacagcatgttttataactgctctttgttgcaagatgcctgtcactgatg |
98 |
Q |
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| T |
37831995 |
gacagcatgttttataactgcattgtgttgcaagatgcctgtcaatgatg |
37832044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 38382537 - 38382349
Alignment:
| Q |
1 |
tatggtgtctaatggtttagtgatcctagcaattcacatggtcaaaatgacagcatgttttataactgctctttgttgcaagatgcctgtcactgatgct |
100 |
Q |
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| T |
38382537 |
tatggtgtatactggtttagcggtccttgtaactcacttggtcaaaatgacagcatgctttataactgccctttgttgcaagatgcctgtcactgatgct |
38382438 |
T |
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| Q |
101 |
ttctgtatttccctcattttgaacactaaaggtgtggtggaagttggcatctacaattctgcatttgacgatcaagtactgcatttaac |
189 |
Q |
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| T |
38382437 |
ttgtgtatttccctcattttgaacactaaaggtgtgatcgaagttggcatctacagttctgcatttgacgatcaagtattgcatttaac |
38382349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 38399972 - 38399796
Alignment:
| Q |
13 |
tggtttagtgatcctagcaattcacatggtcaaaatgacagcatgttttataactgctctttgttgcaagatgcctgtcactgatgctttctgtatttcc |
112 |
Q |
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||||||| || |||| |||| |||| ||||||||||| |||||| ||||||||||| ||||||||||| || ||||||| ||||||||| ||||||||| |
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| T |
38399972 |
tggtttactggtccttgcaactcacttggtcaaaatggcagcattatttataactgccctttgttgcaaaatacctgtcattgatgctttgtgtatttcc |
38399873 |
T |
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| Q |
113 |
ctcattttgaacactaaaggtgtggtggaagttggcatctacaattctgcatttgacgatcaagtactgcatttaac |
189 |
Q |
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| T |
38399872 |
cttattttgaacactaaaggcgtgatggaagttggcatatacaattccgcatttgacgatcaagtactacatttaac |
38399796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 38391394 - 38391207
Alignment:
| Q |
2 |
atggtgtctaatggtttagtgatcctagcaattcacatggtcaaaatgacagcatgttttataactgctctttgttgcaagatgcctgtcactgatgctt |
101 |
Q |
| |
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||||||| || |||||||| | |||| | || |||| ||||||||||| |||||| |||||||||| ||||||||||| || ||||||| |||||||| |
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| T |
38391394 |
atggtgtatactggtttagcggtccttgtaactcacttggtcaaaatggcagcattatttataactgtcctttgttgcaaaatacctgtcattgatgctt |
38391295 |
T |
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| Q |
102 |
tctgtatttccctcattttgaacactaaaggtgtggtggaagttggcatctacaattctgcatttgacgatcaagtactgcatttaac |
189 |
Q |
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| T |
38391294 |
tgtgtatttcccttattttgaacactaagggcgtgatggaagttggcatctacaattccgcatttgacgatcaagtactgcatttaac |
38391207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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