View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6879_low_36 (Length: 224)
Name: NF6879_low_36
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 14371895 - 14372096
Alignment:
| Q |
20 |
gagtctacacattggagtttgaagaggatcttgctagatagtatagggttatatgtagcgtttgagaagttcattctatattatatcatgacggacctag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
14371895 |
gagtctacacattggagtttgaagaggatcttgctagatagcatagggttatatgtagcgtttgagaagttcattctatattatatcatgacagatctag |
14371994 |
T |
|
| Q |
120 |
atcccctactgtaattgcttc----------acacagtagttgatctcaaccatagaaaaatgattcaatggtttagatttgtttggccaattatcacac |
209 |
Q |
| |
|
||||| ||||||||||||||| || |||||||| |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14371995 |
atcccttactgtaattgcttcacgcagttatacgcagtagttaatctcaaccatatataaatgattcaatggtttaaatttgtttggccaattatcacac |
14372094 |
T |
|
| Q |
210 |
ag |
211 |
Q |
| |
|
|| |
|
|
| T |
14372095 |
ag |
14372096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 18529973 - 18529907
Alignment:
| Q |
145 |
agtagttgatctcaaccatagaaaaatgattcaatggtttagatttgtttggccaattatcacacag |
211 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
18529973 |
agtaattgatctcagccatagaaaaatgattcgatggtttagatttgtttggccagttatcacacag |
18529907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 6939203 - 6939140
Alignment:
| Q |
112 |
ggacctagatcccctactgtaattgcttcacacagtagttgatctcaaccatagaaaaatgatt |
175 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||||| |||| | |||||||||||| ||||| |
|
|
| T |
6939203 |
ggacctagatcgcctattgtaaatgcttcacacagtagctgatttaaaccatagaaaagtgatt |
6939140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 43681907 - 43681990
Alignment:
| Q |
112 |
ggacctagatcccctactgtaattgcttcacacagtagttgatctcaaccatagaaaaatgattcaatggtttagatttgtttg |
195 |
Q |
| |
|
||||||||||| ||| |||||| |||||||| |||||| |||||| |||| ||||||| |||||||| ||| |||||| |||| |
|
|
| T |
43681907 |
ggacctagatcgcctgctgtaaatgcttcacgcagtagctgatctgaaccgtagaaaagtgattcaacagttcagatttatttg |
43681990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 34140391 - 34140330
Alignment:
| Q |
134 |
ttgcttcacacagtagttgatctcaaccatagaaaaatgattcaatggtttagatttgtttg |
195 |
Q |
| |
|
|||||||||||||| | ||||||||||| || |||| |||||||| | |||||||||||||| |
|
|
| T |
34140391 |
ttgcttcacacagttgatgatctcaaccgtaaaaaagtgattcaacgatttagatttgtttg |
34140330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 44009620 - 44009553
Alignment:
| Q |
144 |
cagtagttgatctcaaccatagaaaaatg-attcaatggtttagatttgtttggccaattatcacaca |
210 |
Q |
| |
|
|||||||||||| || |||||||||| | | ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
44009620 |
cagtagttgatcgcagtcatagaaaaaaggaatcaatggtttagatttgtttggctagttatcacaca |
44009553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University