View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6879_low_37 (Length: 219)

Name: NF6879_low_37
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6879_low_37
NF6879_low_37
[»] chr8 (2 HSPs)
chr8 (39-131)||(34824219-34824311)
chr8 (5-39)||(34824160-34824194)
[»] chr7 (1 HSPs)
chr7 (47-167)||(44147806-44147926)
[»] chr2 (1 HSPs)
chr2 (45-167)||(5751738-5751860)
[»] chr1 (1 HSPs)
chr1 (71-138)||(32652561-32652628)
[»] chr4 (1 HSPs)
chr4 (84-131)||(23239399-23239446)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 34824219 - 34824311
Alignment:
Q  39 tgcatcgtgtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34824219 tgcatcgtgtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagt 34824311  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 34824160 - 34824194
Alignment:
Q  5 aatcaaacttcagttagagaaagacagtttaccat 39  Q
    |||||||||||||||||||||||||||||||||||    
T  34824160 aatcaaacttcagttagagaaagacagtttaccat 34824194  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 44147806 - 44147926
Alignment:
Q  47 gtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagtacccttttttgacat 146  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||| |  ||||||    
T  44147806 gtatactgcagaattcgccggggaaccagataacggttgaacatttacaccccacttgttactatccagatggattgcagcaagtgccctctcctgacat 44147905  T
Q  147 agtttttcaagctcatcaatg 167  Q
    ||| |||||| ||||||||||    
T  44147906 agtatttcaatctcatcaatg 44147926  T

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Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 5751738 - 5751860
Alignment:
Q  45 gtgtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagtacccttttttgac 144  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| | ||| || | | |||||| ||| |    
T  5751738 gtgtatactgcaaaattagccggggaaccagataatggttgaacatttacaccccacttgtcaccatctagatgaaatgcagccaatgccctttgttggc 5751837  T
Q  145 atagtttttcaagctcatcaatg 167  Q
    ||||  |||| ||||||||||||    
T  5751838 ataggatttcgagctcatcaatg 5751860  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 32652628 - 32652561
Alignment:
Q  71 accagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagtacccttt 138  Q
    ||||| |||||||| |||| ||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  32652628 accagctaatggtttaacacttacaccccacttattacaatctagatggaatgcggcaagtacccttt 32652561  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 23239446 - 23239399
Alignment:
Q  84 tgaacatttacaccccacttgttactatctagatggactgcggcaagt 131  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  23239446 tgaacatttacaccccacttgttacaatctagatggaatgcggcaagt 23239399  T

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