View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6879_low_39 (Length: 213)

Name: NF6879_low_39
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6879_low_39
NF6879_low_39
[»] chr8 (8 HSPs)
chr8 (21-196)||(3423669-3423845)
chr8 (20-143)||(34653298-34653420)
chr8 (29-119)||(13636244-13636334)
chr8 (29-119)||(13736657-13736747)
chr8 (21-110)||(24334458-24334547)
chr8 (38-109)||(3670555-3670626)
chr8 (20-120)||(41086832-41086932)
chr8 (20-109)||(44167176-44167265)
[»] chr7 (8 HSPs)
chr7 (26-121)||(45411265-45411360)
chr7 (23-113)||(40024192-40024282)
chr7 (19-109)||(46288829-46288919)
chr7 (65-126)||(21946151-21946212)
chr7 (42-113)||(31245262-31245333)
chr7 (43-108)||(12139824-12139887)
chr7 (21-119)||(23070231-23070329)
chr7 (21-110)||(2256435-2256523)
[»] chr2 (10 HSPs)
chr2 (23-121)||(16209831-16209929)
chr2 (19-120)||(4818744-4818843)
chr2 (26-131)||(29140163-29140269)
chr2 (39-121)||(38373365-38373447)
chr2 (49-110)||(19028478-19028539)
chr2 (20-121)||(30554532-30554638)
chr2 (32-105)||(4604675-4604747)
chr2 (64-127)||(18967757-18967820)
chr2 (36-97)||(14818824-14818885)
chr2 (49-121)||(35005222-35005294)
[»] chr5 (6 HSPs)
chr5 (21-131)||(30251965-30252075)
chr5 (21-113)||(26402019-26402111)
chr5 (43-119)||(10418601-10418677)
chr5 (20-112)||(1637987-1638079)
chr5 (58-121)||(25731219-25731282)
chr5 (20-121)||(42641116-42641217)
[»] chr1 (10 HSPs)
chr1 (20-113)||(30350735-30350828)
chr1 (19-138)||(30264081-30264205)
chr1 (48-119)||(26768708-26768778)
chr1 (21-118)||(12188639-12188736)
chr1 (37-104)||(9552818-9552885)
chr1 (26-81)||(50014189-50014244)
chr1 (43-121)||(8772434-8772512)
chr1 (48-80)||(52426245-52426277)
chr1 (24-119)||(46536653-46536748)
chr1 (59-120)||(16632750-16632811)
[»] chr3 (9 HSPs)
chr3 (21-119)||(35744714-35744814)
chr3 (25-146)||(20137590-20137709)
chr3 (21-119)||(47510750-47510848)
chr3 (20-108)||(29398268-29398356)
chr3 (25-146)||(23278016-23278135)
chr3 (52-124)||(41632026-41632098)
chr3 (19-90)||(40394905-40394976)
chr3 (39-81)||(42426246-42426288)
chr3 (35-119)||(44765299-44765383)
[»] chr6 (3 HSPs)
chr6 (21-131)||(23131454-23131564)
chr6 (39-121)||(29694306-29694388)
chr6 (20-112)||(2223669-2223761)
[»] chr4 (7 HSPs)
chr4 (21-121)||(14124203-14124303)
chr4 (21-121)||(16502425-16502524)
chr4 (29-113)||(51088916-51089000)
chr4 (21-81)||(2392597-2392657)
chr4 (26-146)||(34341398-34341518)
chr4 (49-80)||(32906156-32906187)
chr4 (52-88)||(42009690-42009726)
[»] scaffold0007 (1 HSPs)
scaffold0007 (43-120)||(246547-246624)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 3e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 3423845 - 3423669
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 120  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  3423845 attagtagaaattatgttttagaaatgcaagtttttatttttgtcttagcaataattacacaagttttagttacaaaattacttattttagtactttaac 3423746  T
Q  121 cgatacctcaacgacactagttagca-nnnnnnnnnnngaacaaaatttgagatattatcccgatttacttgatatt 196  Q
    ||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||| |||||||    
T  3423745 cgatacctcaacgacactagttagcatttttttttttggaacaaaatttgagatattatcccgatttacgtgatatt 3423669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 34653298 - 34653420
Alignment:
Q  20 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 119  Q
    |||||||||||||||||| ||| ||| ||||||||||| ||||||||| ||||||||||||||| |||| ||   || |||||||||||||||| |||||    
T  34653298 tattagtagaaattatgtcttgaaaacgcaagtttttacttttgtctt-gcaataattacacaactttttgtagtaatgttacttattttagtactttaa 34653396  T
Q  120 ccgatacctcaacgacactagtta 143  Q
     | || |||||| | |||||||||    
T  34653397 tcaatgcctcaagggcactagtta 34653420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 13636334 - 13636244
Alignment:
Q  29 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 119  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13636334 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13636244  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 13736747 - 13736657
Alignment:
Q  29 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 119  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13736747 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 24334547 - 24334458
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttta 110  Q
    ||||||||||||| ||||||  |||| |||||||||| |||| |||| | ||||||||||||| ||||  || |||| || |||||||||    
T  24334547 attagtagaaattttgttttaaaaatacaagtttttacttttctcttggtaataattacacaactttttattgcaaaattgcttatttta 24334458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 3670626 - 3670555
Alignment:
Q  38 tttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 109  Q
    ||||||||| |||||||||| |||||| ||| |||||||||||||| ||||   || ||| |||||||||||    
T  3670626 tttggaaatacaagtttttaattttgttttaacaataattacacaactttttaataaaaacttacttatttt 3670555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 41086832 - 41086932
Alignment:
Q  20 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtatttta 118  Q
    |||| ||||||| | ||| |||||||| ||| |||||| |||| |||| | ||||||||||||| |||||| ||| ||| ||||||||||| ||| ||||    
T  41086832 tatttgtagaaactttgtcttggaaatacaaatttttacttttatcttggtaataattacacaacatttta-ttaaaaaattacttattttggtacttta 41086930  T
Q  119 ac 120  Q
    ||    
T  41086931 ac 41086932  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 44167176 - 44167265
Alignment:
Q  20 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 109  Q
    ||||| |||||| | ||| |||||||| ||| | |||| |||| |||||||||| ||||||||| |||| | | |||| |||||||||||    
T  44167176 tattaatagaaactttgtcttggaaatacaaatctttacttttttcttagcaatgattacacaacttttcgatgcaaacttacttatttt 44167265  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 45411360 - 45411265
Alignment:
Q  26 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 121  Q
    ||||||||||||||| |||||||||||||||| |||| ||| | ||||||||||| || |||| |||| ||||||||||||||||||| |||||||    
T  45411360 tagaaattatgttttagaaatgcaagtttttacttttatctcaacaataattacataactttttgttataaagttacttattttagtactttaacc 45411265  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 40024192 - 40024282
Alignment:
Q  23 tagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 113  Q
    ||||| ||||||||||||| ||||||||||||||| |||| | |||||||||||||||||| ||||  || ||||||||||||| ||||||    
T  40024192 tagtataaattatgttttgcaaatgcaagtttttacttttattttagcaataattacacaactttttattgcaaagttacttatgttagta 40024282  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 46288829 - 46288919
Alignment:
Q  19 ttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 109  Q
    ||||||||||||||| ||| ||  |||||||||||||| ||||||||||||||||||||||| || ||||  || |||| || ||||||||    
T  46288829 ttattagtagaaattttgtcttaaaaatgcaagtttttgtttttgtcttagcaataattacataattttttattgcaaaattgcttatttt 46288919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 21946212 - 21946151
Alignment:
Q  65 cttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatac 126  Q
    ||||| ||||||||||||| ||||  || |||||||||||||||||||||||||||| ||||    
T  21946212 cttagtaataattacacaactttttattgcaaagttacttattttagtattttaaccaatac 21946151  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 31245262 - 31245333
Alignment:
Q  42 gaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 113  Q
    ||||| ||||| || | ||||||||||||||||||||||| | |||| | | |||| |||||||||||||||    
T  31245262 gaaatacaagtcttcacttttgtcttagcaataattacaccatttttcgatgcaaacttacttattttagta 31245333  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 12139824 - 12139887
Alignment:
Q  43 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 108  Q
    |||| |||||||||||||  |||| |||||||||||||||| ||||  || |||||||||||||||    
T  12139824 aaatacaagtttttattt--gtctcagcaataattacacaactttttatttcaaagttacttattt 12139887  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 23070231 - 23070329
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 119  Q
    |||| |||||| | ||| |||||||| ||||| |||| |||| |||||||||| ||||||| | |||| | | |||| |||||||||||| || |||||    
T  23070231 attaatagaaactttgtcttggaaatacaagtctttacttttttcttagcaatgattacaccacttttcgatgcaaatttacttattttaatactttaa 23070329  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 2256435 - 2256523
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttta 110  Q
    |||| |||||| ||||| || ||||||||||| ||||||||| |||||| ||| ||||||| | |||| | | |||| ||||||||||||    
T  2256435 attaatagaaactatgtcttagaaatgcaagtatttattttt-tcttaggaatgattacaccacttttcgatgcaaacttacttatttta 2256523  T

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Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 16209831 - 16209929
Alignment:
Q  23 tagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 121  Q
    ||||||||| | |||||||||||| ||||| |||| |||||||||||||||| |||||||| |||| |||  ||||||||||||||||||| |||||||    
T  16209831 tagtagaaactttgttttggaaatacaagtgtttacttttgtcttagcaatagttacacaactttttgttttaaagttacttattttagtactttaacc 16209929  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 4818744 - 4818843
Alignment:
Q  19 ttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttta 118  Q
    ||||||||||||||| || || |||||| |||||||||| |||| |||||  ||||||||||||| ||||| || |||||||||||||||||||| ||||    
T  4818744 ttattagtagaaattttgctt-ggaaattcaagtttttacttttatcttaataataattacacaattttta-tttcaaagttacttattttagtacttta 4818841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 29140269 - 29140163
Alignment:
Q  26 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaaccgat 124  Q
    |||||||| |||  || |||| |||||||||||||||  |||||||||||||||||||  |||| ||| |||| ||||||||||||||| ||||||| ||    
T  29140269 tagaaattttgtcctgaaaatacaagtttttattttttccttagcaataattacacaatttttttgtttcaaaattacttattttagtactttaaccaat 29140170  T
Q  125 acctcaa 131  Q
    | |||||    
T  29140169 atctcaa 29140163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 38373365 - 38373447
Alignment:
Q  39 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 121  Q
    |||||||| |||||||||| |||| |||||||||||||||||| | |||| | | |||| |||||||||||| ||||||||||    
T  38373365 ttggaaatacaagtttttacttttatcttagcaataattacaccatttttcgatgcaaatttacttattttaatattttaacc 38373447  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 19028478 - 19028539
Alignment:
Q  49 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttta 110  Q
    ||||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||||||||||    
T  19028478 aagtttttacttttgtcttagtaataattacacaactttttgttgcaaagttacttatttta 19028539  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 30554638 - 30554532
Alignment:
Q  20 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac-----aaagttacttattttagtat 114  Q
    |||||||||||||||||| ||| |||||||  |||||| |||||||||| || ||||||||||| |||| ||| |     ||||| |||||||||| |||    
T  30554638 tattagtagaaattatgtcttgaaaatgcacatttttacttttgtcttaacattaattacacaattttttgttgcaaattaaagtaacttattttaatat 30554539  T
Q  115 tttaacc 121  Q
    |||||||    
T  30554538 tttaacc 30554532  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 4604747 - 4604675
Alignment:
Q  32 ttatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactta 105  Q
    |||||| ||||||||||||||||| |||| |||||||||| ||||||||||| |||| ||| |  |||||||||    
T  4604747 ttatgtcttggaaatgcaagtttt-atttctgtcttagcagtaattacacaactttttgttgcttagttactta 4604675  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 18967757 - 18967820
Alignment:
Q  64 tcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatacc 127  Q
    ||||| |||||||||||||| |||| ||| |||| |||| ||||||| |||||||||| |||||    
T  18967757 tcttaacaataattacacaacttttcgttgcaaacttacgtattttaatattttaaccaatacc 18967820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 14818885 - 14818824
Alignment:
Q  36 gttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 97  Q
    |||||| |||||||| |||||| |||||| ||||||||||||| |||| |||| | ||||||    
T  14818885 gttttgaaaatgcaaatttttacttttgttttagcaataattatacaattttttgatacaaa 14818824  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 35005294 - 35005222
Alignment:
Q  49 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 121  Q
    |||| |||| |||| |||||||||| ||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  35005294 aagtctttacttttttcttagcaatgattacaccacttttcgatgcaaacttacttattttagtactttaacc 35005222  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 30251965 - 30252075
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 120  Q
    |||| |||||||| ||| |||||||| ||||| |||| |||| |||||||||||||||||| | |||| | ||||||  || ||||||||||| ||||||    
T  30251965 attaatagaaattttgtcttggaaatacaagtctttacttttttcttagcaataattacaccacttttcgatacaaatatatttattttagtactttaac 30252064  T
Q  121 cgatacctcaa 131  Q
    | |||||||||    
T  30252065 caatacctcaa 30252075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 26402019 - 26402111
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 113  Q
    ||||||||||||| ||| ||||||||||||| ||| | |||||||||| |||| ||||||||| ||||  ||  ||| |||||||||||||||    
T  26402019 attagtagaaattttgtattggaaatgcaagctttcacttttgtcttaacaatgattacacaactttttattgaaaaattacttattttagta 26402111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 10418677 - 10418601
Alignment:
Q  43 aaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaa 119  Q
    |||| ||||||||||||||||| ||| |||||||||||||| |||||| || ||||||||||||||||| || |||||    
T  10418677 aaatacaagtttttatttttgttttaacaataattacacaacattttattt-caaagttacttattttaatactttaa 10418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 1637987 - 1638079
Alignment:
Q  20 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagt 112  Q
    ||||| || ||||| ||| |||||||| ||| |||||| |||| |||||||||||||||||||| |||| | | |||| ||| ||||||||||    
T  1637987 tattaatataaattttgtcttggaaatacaaatttttacttttttcttagcaataattacacaactttttgatgcaaacttatttattttagt 1638079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 25731282 - 25731219
Alignment:
Q  58 tttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 121  Q
    ||||| |||||||||||||||||||| ||||   | |||| ||||||||||||||| |||||||    
T  25731282 tttttttcttagcaataattacacaacttttctatgcaaacttacttattttagtactttaacc 25731219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 42641217 - 42641116
Alignment:
Q  20 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 119  Q
    ||||| |||||| | ||| ||| |||| ||||| |||| |||| ||||| |||| ||||||| | |||| | | |||| ||||||||||||||| |||||    
T  42641217 tattaatagaaactttgtcttgaaaatacaagtctttacttttttcttatcaatgattacaccatttttcgatgcaaacttacttattttagtactttaa 42641118  T
Q  120 cc 121  Q
    ||    
T  42641117 cc 42641116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 30350828 - 30350735
Alignment:
Q  20 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 113  Q
    ||||||||| |||||||| ||||||||||||| ||||  |||| |||||||||| ||||||||| | ||  || ||||||||||||||||||||    
T  30350828 tattagtaggaattatgtcttggaaatgcaagcttttgcttttatcttagcaatgattacacaattgtttattgcaaagttacttattttagta 30350735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 30264081 - 30264205
Alignment:
Q  19 ttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaa-----taattacacaaattttagttacaaagttacttattttagta 113  Q
    ||||||||||||||| ||||||| ||||| ||||||||| |||||||||| |||     ||||||||||| |||| |||  |||||||||||||||| ||    
T  30264081 ttattagtagaaattttgttttgaaaatgtaagtttttacttttgtcttatcaataatttaattacacaattttttgttgtaaagttacttattttaata 30264180  T
Q  114 ttttaaccgatacctcaacgacact 138  Q
     ||||||  ||| ||||| ||||||    
T  30264181 atttaacaaatatctcaatgacact 30264205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 26768778 - 26768708
Alignment:
Q  48 caagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 119  Q
    ||||||||||||||||||||| | ||||| ||||||||||| | |||||| ||||||||||||||| |||||    
T  26768778 caagtttttatttttgtcttatctataatcacacaaatttt-gatacaaatttacttattttagtaatttaa 26768708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 12188736 - 12188639
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttta 118  Q
    |||| |||||| | ||| |||||||| ||| |||||| |||| |||||||||||||||||| | ||||   |||||| ||||||||||||||| ||||    
T  12188736 attaatagaaactttgtcttggaaatacaaatttttacttttttcttagcaataattacaccatttttcaatacaaaattacttattttagtacttta 12188639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 9552885 - 9552818
Alignment:
Q  37 ttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactt 104  Q
    |||||||||||||||| |||| |||||||||| |||||||||||||  |||| |||  ||||||||||    
T  9552885 ttttggaaatgcaagtatttacttttgtcttatcaataattacacacctttttgttgtaaagttactt 9552818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 50014189 - 50014244
Alignment:
Q  26 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 81  Q
    |||||| | |||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  50014189 tagaaactttgtttttgaaatacaaatttttatttttgtcttagcaataattacac 50014244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 8772434 - 8772512
Alignment:
Q  43 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 121  Q
    |||| ||||| |||| ||||||||| ||||||||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  8772434 aaatacaagtctttacttttgtcttggcaataattacaccacttttcgatgcaaatttacttattttagtactttaacc 8772512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 52426277 - 52426245
Alignment:
Q  48 caagtttttatttttgtcttagcaataattaca 80  Q
    |||||||||||||||||||||||||||||||||    
T  52426277 caagtttttatttttgtcttagcaataattaca 52426245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 46536748 - 46536653
Alignment:
Q  24 agtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 119  Q
    |||| ||||| | ||||| |||| |||||||||| |||||||||| |||||| ||||||| |||   || |||| |||||||||||| || |||||    
T  46536748 agtacaaattctattttgaaaatacaagtttttacttttgtcttatcaataactacacaactttgtattgcaaaattacttattttaatactttaa 46536653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 16632750 - 16632811
Alignment:
Q  59 ttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 120  Q
    ||||||||| | ||||||||||||| ||||  |||||||||| ||||||||| || ||||||    
T  16632750 ttttgtcttggtaataattacacaattttttattacaaagttgcttattttaatactttaac 16632811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 35744714 - 35744814
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatt---ttagttacaaagttacttattttagtatttt 117  Q
    |||||||||||| |||| |||||| |||||||||||| |||||||||| ||||||||||||| |||   || |||||||| |||||||||||| || |||    
T  35744714 attagtagaaatcatgtattggaa-tgcaagtttttacttttgtcttaccaataattacacatatttaatttgttacaaaattacttattttaatacttt 35744812  T
Q  118 aa 119  Q
    ||    
T  35744813 aa 35744814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 20137590 - 20137709
Alignment:
Q  25 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 124  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||||||||||||||| | ||||| ||    
T  20137590 gtagaaattttgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttacttattttagtactctaaccaat 20137687  T
Q  125 acctcaacgacactagttagca 146  Q
      | ||| | ||||||||||||    
T  20137688 gtcccaagggcactagttagca 20137709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 47510848 - 47510750
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 119  Q
    |||| |||||| ||||| |||||||| ||| | ||| ||||| ||||| |||||||||||| | |||| | |||||| ||||||||||||||| |||||    
T  47510848 attaatagaaactatgtcttggaaatacaaatctttgtttttttcttaacaataattacaccatttttcgatacaaacttacttattttagtactttaa 47510750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 29398268 - 29398356
Alignment:
Q  20 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 108  Q
    |||||||||||||| | |||||||||||||| ||||||| | | |  |||||||| |||||||| |||| |||  ||||||||||||||    
T  29398268 tattagtagaaattttattttggaaatgcaaatttttatctctctaatagcaatagttacacaactttttgttgtaaagttacttattt 29398356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 23278135 - 23278016
Alignment:
Q  25 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 124  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||  ||||||||||| | ||||| ||    
T  23278135 gtagaaattctgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttgtttattttagtactctaaccaat 23278038  T
Q  125 acctcaacgacactagttagca 146  Q
      ||||| | ||||||||||||    
T  23278037 gtctcaagggcactagttagca 23278016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 41632026 - 41632098
Alignment:
Q  52 tttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 124  Q
    |||||||||||||||||| ||||||||||| | ||||  || |||| || |||||||||| ||||||| ||||    
T  41632026 tttttatttttgtcttagtaataattacactattttttattgcaaacttgcttattttagaattttaatcgat 41632098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 40394976 - 40394905
Alignment:
Q  19 ttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttag 90  Q
    ||||||||||||||| | | ||  ||||| |||||||||||||| | |||| ||||||||||||| ||||||    
T  40394976 ttattagtagaaattttatcttaaaaatgtaagtttttatttttattttagtaataattacacaacttttag 40394905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 42426288 - 42426246
Alignment:
Q  39 ttggaaatgcaagtttttatttttgtcttagcaataattacac 81  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  42426288 ttggaaatataagtttttatttttgtcttaacaataattacac 42426246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 44765299 - 44765383
Alignment:
Q  35 tgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 119  Q
    |||||||||||| ||||| |||| || | |||||||||||||||||| | ||||   | |||| |||||||||||| || |||||    
T  44765299 tgttttggaaatacaagtctttacttatttcttagcaataattacaccacttttcaatgcaaacttacttattttaatactttaa 44765383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 23131454 - 23131564
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 120  Q
    ||||||||||| | ||| ||| ||||  || |||||| |||||| |||||||||||||| ||| ||||  || |||| ||||||||||||||| ||||||    
T  23131454 attagtagaaactttgtcttgaaaatataaatttttacttttgttttagcaataattacgcaactttttattgcaaaattacttattttagtactttaac 23131553  T
Q  121 cgatacctcaa 131  Q
    | ||| |||||    
T  23131554 caataactcaa 23131564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 29694388 - 29694306
Alignment:
Q  39 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 121  Q
    |||||||| ||||||||||||||||||||| |||||||||||  | ||||   | |||| ||||||||||||||| |||||||    
T  29694388 ttggaaatacaagtttttatttttgtcttaacaataattacatcacttttcaatgcaaacttacttattttagtactttaacc 29694306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 2223761 - 2223669
Alignment:
Q  20 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagt 112  Q
    |||||||| ||||| ||||||  |||| ||| |||||| || |||||||  |||||||||| || |||| ||| ||| |||||||||||||||    
T  2223761 tattagtaaaaattctgttttaaaaatacaaatttttacttctgtcttaataataattacataattttttgttgcaatgttacttattttagt 2223669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 14124303 - 14124203
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 120  Q
    |||| |||||| | ||||||||||||  ||||||||| |||| ||||||||| |||||||| | |||| | | |||| |||||||||||| || ||||||    
T  14124303 attaatagaaactttgttttggaaatataagtttttacttttttcttagcaaaaattacaccatttttcgatgcaaatttacttattttaatactttaac 14124204  T
Q  121 c 121  Q
    |    
T  14124203 c 14124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 16502425 - 16502524
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 120  Q
    ||||||||||| | ||| |||||||| ||| ||||||||||  |||| |||||| |||||||| |||| |||  | ||||||||||||||||| ||||||    
T  16502425 attagtagaaactttgtcttggaaatacaaatttttattttc-tcttggcaatatttacacaactttttgttttagagttacttattttagtactttaac 16502523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 51089000 - 51088916
Alignment:
Q  29 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 113  Q
    ||||||| | ||| ||||| || |||||| |||| |||||  ||||||||||||| ||||  |||||||||||||||||||||||    
T  51089000 aaattatatgttgaaaatgtaaatttttacttttatcttacaaataattacacaattttttattacaaagttacttattttagta 51088916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 2392597 - 2392657
Alignment:
Q  21 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 81  Q
    ||||||||||| | ||| ||| ||||||||||||||| ||||||||| ||||||| |||||    
T  2392597 attagtagaaactttgtcttgtaaatgcaagtttttacttttgtcttggcaataactacac 2392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 34341518 - 34341398
Alignment:
Q  26 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgata 125  Q
    |||||||| |||| |  |||| |||| ||||| ||||||||||||||||||||||||| ||||   |||||| |||| ||||| || | ||||||| ||     
T  34341518 tagaaattttgttgtaaaaatacaagattttacttttgtcttagcaataattacacaactttttaatacaaacttacatatttgagaactttaaccaatg 34341419  T
Q  126 cctcaacgacactagttagca 146  Q
     |||||  ||||| |||||||    
T  34341418 tctcaagaacactcgttagca 34341398  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 32906156 - 32906187
Alignment:
Q  49 aagtttttatttttgtcttagcaataattaca 80  Q
    ||||||||||||||||||||||||||||||||    
T  32906156 aagtttttatttttgtcttagcaataattaca 32906187  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 42009726 - 42009690
Alignment:
Q  52 tttttatttttgtcttagcaataattacacaaatttt 88  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  42009726 tttttatttttgtcttagtaataattacacaactttt 42009690  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 246547 - 246624
Alignment:
Q  43 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 120  Q
    |||| |||||||||| |||| ||| |||||||||||||| | |||| | | |||| ||||||||||||||| ||||||    
T  246547 aaatacaagtttttacttttttctgagcaataattacaccacttttcgatgcaaacttacttattttagtactttaac 246624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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