View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6879_low_4 (Length: 421)
Name: NF6879_low_4
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 396
Target Start/End: Original strand, 15462178 - 15462582
Alignment:
| Q |
12 |
catcatcgtcatcaacagcaactgcccctaaaccctcggggactaaacgtccaaccatggacaagatctttggaattaaaaattagaaaatatcagattt |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15462178 |
catcttcgtcatcaacagcaactgcccctaaaccctcggggactaaacgtccaaccatggacaagatctttggaattagaaattagaaaatatcagattt |
15462277 |
T |
|
| Q |
112 |
aattgcacttttggtctttcaatgatcgtgattgtgcaattttaaccccccataatctttagagattttggcatc----tatataagtggggagttaaag |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15462278 |
aattgcacttttgatctttcaatgatcgtgattgtgcgattttaaccccccgtaatatttagagattttggcatctatatatataagtggggagttaaag |
15462377 |
T |
|
| Q |
208 |
tttcacaatcacaatactttggaggatt-------caactatcacatgatatc-----------gtttaatacagtatcgtcaaataaagaaagtctggg |
289 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |
|
|
| T |
15462378 |
ttccacaatcacaatactttggaggattaaaattgcaactatcacatgatatctttacaagtttgtttaat--agtatcgtcaaataaagaaagtctgtg |
15462475 |
T |
|
| Q |
290 |
tagtccaagtttttactaattacagcatgtatctatgtaacttctattattcattgatttcaatttatttatgaaatatatattcttttgtatttgaagt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15462476 |
tagtccaagtttttactaattacagcatgtatctatgtaacttccattattcattgatttcaatttatttatgaaatatatattcttttgtatttgaagt |
15462575 |
T |
|
| Q |
390 |
tataaga |
396 |
Q |
| |
|
||||||| |
|
|
| T |
15462576 |
tataaga |
15462582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 396
Target Start/End: Original strand, 15452272 - 15452662
Alignment:
| Q |
12 |
catcatcgtcatcaacagcaactgcccctaaaccctcggggactaaacgtccaaccatggacaagatctttggaattaaaaattagaaaatatcagattt |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
15452272 |
catcatcgtcatcaactgcaactgcccctaaaccctcgggaactaaacctccaaccatggacaagatcttcggaatta-------gaaaatatcagattt |
15452364 |
T |
|
| Q |
112 |
aattgcacttttggtctttcaatgatcgtgattgtgcaattttaaccccccataatctttagagattttggcatctatataagtggggagttaaagtttc |
211 |
Q |
| |
|
||||||||||||| |||| || ||| | |||||||| |||||| ||||||||| | || | |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
15452365 |
aattgcacttttgttcttccattgaccacgattgtgcggttttaaacccccataacatctatatattttggcgtctatataagtggggagttaaagttcc |
15452464 |
T |
|
| Q |
212 |
acaatcaca-atactttggaggatt-------caactatcacatgatatc-------gtttaat--acagtatcgtcaaataaagaaagtctgggtagtc |
294 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| |||| |||| | | ||||||||||| ||||||||| ||||| |
|
|
| T |
15452465 |
acaatcacacatactttggaggattaaaattgcaactatcacataatatttttacaagtttgttcaatagtatcgtcaag----gaaagtctgtttagtc |
15452560 |
T |
|
| Q |
295 |
caagtttttactaattacagcatgtatctatgtaacttctattattcattgatttcaatttatttatgaaatatatattcttttgtatttgaagttataa |
394 |
Q |
| |
|
| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15452561 |
tatgtttttattaattacagcatatatctatgtaacttccattattcattgattttaatttgtttctgaaatatatattcttttgtatttgaagttataa |
15452660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 15442986 - 15443156
Alignment:
| Q |
62 |
ccaaccatggacaagatctttggaattaaaaattagaaaatatcagatttaattgcacttttggtctttcaatgatcgtgattgtgcaattttaaccccc |
161 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| || || | |||||||||| ||| |||||||| |
|
|
| T |
15442986 |
ccaaccatggacaagatcttcggaattagaaattagaaaatatttgatttaattgcacttttggtcttccagtgtttgtgattgtgcgattataaccccc |
15443085 |
T |
|
| Q |
162 |
cataatctttagagattttggcatctatataagtggggagttaaagtttcacaatcacaatactttggaggatt |
235 |
Q |
| |
|
| |||||||| |||||||| | | ||||||| |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
15443086 |
t-tcatctttagcaattttggc-tgt-tataagtagggagttaaaatttcacaatcacaactctttggaggatt |
15443156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 396
Target Start/End: Original strand, 15443225 - 15443321
Alignment:
| Q |
300 |
ttttactaattacagcatgtatctatgtaacttctattattcattgatttcaatttatttatgaaatatatattcttttgtatttgaagttataaga |
396 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
15443225 |
ttttattaattacagcatgtacttatgtaatttcctttattcattgatttcaatttgtttatgaaatatatattcttttgtattgtaacttataaga |
15443321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 15436590 - 15436644
Alignment:
| Q |
50 |
gggactaaacgtccaaccatggacaagatctttggaattaaaaattagaaaatat |
104 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
15436590 |
gggactaaacatccaaccatggggcagatctttggaattagaaactagaaaatat |
15436644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University