View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6879_low_6 (Length: 406)
Name: NF6879_low_6
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_6 |
 | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
| [»] scaffold0482 (1 HSPs) |
| | |
|
| [»] scaffold0040 (2 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 94743 - 95140
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
94743 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtga |
94842 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
94843 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
94942 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
94943 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
95042 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
95043 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
95140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 104184 - 104581
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
104184 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtga |
104283 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
104284 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
104383 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
104384 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
104483 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
104484 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
104581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 7592882 - 7592485
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7592882 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtga |
7592783 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592782 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
7592683 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
7592682 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
7592583 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7592582 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
7592485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 39 - 398
Target Start/End: Complemental strand, 15173157 - 15172798
Alignment:
| Q |
39 |
caagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaacact |
138 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
15173157 |
caagagatatagtgagagagcatggaattttctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactct |
15173058 |
T |
|
| Q |
139 |
tgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctgtcca |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15173057 |
tgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtcca |
15172958 |
T |
|
| Q |
239 |
aagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgctt |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15172957 |
aagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgctt |
15172858 |
T |
|
| Q |
339 |
gcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
15172857 |
gcgcatgagataaccagctataatgagctgtataacttgctgctcacttctgatgatgtc |
15172798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 48 - 398
Target Start/End: Complemental strand, 15202571 - 15202224
Alignment:
| Q |
48 |
tagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaacacttgcttatga |
147 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
15202571 |
tagtgagagagcttggaatttcctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatat---cttgcaaaactcttgcttatga |
15202475 |
T |
|
| Q |
148 |
ccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctgtccaaagtctcaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15202474 |
ccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaa |
15202375 |
T |
|
| Q |
248 |
ttgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgag |
347 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
15202374 |
ttgatttctcttttcttctttaaaatagccagaacgttctatgaatgttctttctgatttgtctggctttaaaagcactgttgctttgcttgcgcatgag |
15202275 |
T |
|
| Q |
348 |
ttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
15202274 |
ataaccagctgtaatgagttgtataacttgctgcccacttctgatgatgtc |
15202224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 158 - 398
Target Start/End: Original strand, 4118893 - 4119133
Alignment:
| Q |
158 |
cccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4118893 |
cccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctc |
4118992 |
T |
|
| Q |
258 |
ttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagct |
357 |
Q |
| |
|
|||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4118993 |
ttttcttctttaaaatagccaaaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagct |
4119092 |
T |
|
| Q |
358 |
gtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
4119093 |
ttaatgagctgtataacttgttgctcacttctgatgatgtc |
4119133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 3242599 - 3242996
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3242599 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtga |
3242698 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3242699 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
3242798 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
3242799 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
3242898 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3242899 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
3242996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 3917942 - 3917545
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3917942 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtga |
3917843 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3917842 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
3917743 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
3917742 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
3917643 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3917642 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
3917545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 26812384 - 26811987
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26812384 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtga |
26812285 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26812284 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
26812185 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26812184 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
26812085 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26812084 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
26811987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 26821851 - 26821454
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26821851 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtga |
26821752 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26821751 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
26821652 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26821651 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
26821552 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26821551 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
26821454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 54690225 - 54690622
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54690225 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtga |
54690324 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54690325 |
tgattttcactttgagagatattagctttcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
54690424 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
54690425 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
54690524 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54690525 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
54690622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 54699656 - 54700053
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54699656 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtga |
54699755 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54699756 |
tgattttcactttgagagatattagctttcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
54699855 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
54699856 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
54699955 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54699956 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
54700053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 37058962 - 37058566
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37058962 |
tttgagttttacaagag-caaattcaagagagaagatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctctgtttgtagtga |
37058864 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37058863 |
tgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggag |
37058764 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
37058763 |
aaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcaaaatgttcttt |
37058664 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
37058663 |
ctgatttgcctggctttgaaagcactgttgttttgcttgcgcatgagataaccagctgtaatgagctgtataactttgtgcccacttctgatgatgtc |
37058566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 15843210 - 15843605
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15843210 |
tttgagttttacaatag-caaattcaagagagaagatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
15843308 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15843309 |
tgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggag |
15843408 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||| |
|
|
| T |
15843409 |
aaaatagagctgttggacacgttttttatagctgttcaaagtctcaattgatttctcttttcttctttaaaatagccataacgttctcataatgttcttt |
15843508 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| ||||| | |||||||||| |
|
|
| T |
15843509 |
ctgatttgcctggctttgaaagcactgttgc-ttgcttgcgcatgagataaccagctgtaatgagctgtataatttgctgcccaatgctgatgatgtc |
15843605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 267
Target Start/End: Original strand, 18125875 - 18125981
Alignment:
| Q |
160 |
cttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctctt |
259 |
Q |
| |
|
|||||||||||| || |||||| ||| |||| |||| | ||||| |||| ||||||||||||||||| |||||||||||| ||||||| |||| ||| |
|
|
| T |
18125875 |
cttgtatttatatatgtggagtgacttagtgatcaagtgtgaaaaaagagttgttggacacatttttg-cagctgtccaaagcttcaattggtttcactt |
18125973 |
T |
|
| Q |
260 |
ttcttctt |
267 |
Q |
| |
|
|||||||| |
|
|
| T |
18125974 |
ttcttctt |
18125981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 18125754 - 18125822
Alignment:
| Q |
37 |
tccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgatttt |
107 |
Q |
| |
|
||||| || |||| ||||||||||||| ||||| |||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
18125754 |
tccaaaaggtataatgagagagcttggtatttg-tttgtttgtgaagagc-ttgtatgtagtgatgatttt |
18125822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 28352033 - 28352430
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28352033 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtga |
28352132 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28352133 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
28352232 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
28352233 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
28352332 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
28352333 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagttgtataacttgcagcccacttctgatgatgtc |
28352430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 28367966 - 28368362
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28367966 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtga |
28368065 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28368066 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggt-accaagggag |
28368164 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
28368165 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
28368264 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28368265 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28368362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 28375784 - 28376180
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28375784 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtga |
28375883 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28375884 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggt-accaagggag |
28375982 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
28375983 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
28376082 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28376083 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28376180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 28383606 - 28384002
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28383606 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtga |
28383705 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28383706 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggt-accaagggag |
28383804 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
28383805 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
28383904 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28383905 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28384002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 76 - 398
Target Start/End: Original strand, 38529524 - 38529846
Alignment:
| Q |
76 |
ttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtg |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| | |
|
|
| T |
38529524 |
ttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttataatcttcaaaggcccttgtatttataggcg |
38529623 |
T |
|
| Q |
176 |
aggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttc-tcttttcttctttaaaata |
274 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
38529624 |
aggagtgtcttggtgatcaagggagaaaatagagttgttggacacgttttttatagttgtccaaagtctcaattgatttctttttttcttctttaaaata |
38529723 |
T |
|
| Q |
275 |
gtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataac |
374 |
Q |
| |
|
| |||| |||| |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||| |||| |
|
|
| T |
38529724 |
gccagaccgttctcagaatgttctttctgaattgtctgactttgaaagcactgttgc-ttgcttgcgcgtgagagaaccagctgtaatgagttgtttaac |
38529822 |
T |
|
| Q |
375 |
ttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||| ||||| | |||||||||| |
|
|
| T |
38529823 |
ttgttgcccaatgttgatgatgtc |
38529846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 4951455 - 4951164
Alignment:
| Q |
18 |
gcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgaga |
117 |
Q |
| |
|
|||||||| | ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
4951455 |
gcaaattcgaaagagaagatccaagagacatagtgagagaacttggaatttgctttgtttgcaaagagttttgtttgtagtggtgattttcactt-gaga |
4951357 |
T |
|
| Q |
118 |
ga-tattagcttgcaaaaca-cttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttg |
215 |
Q |
| |
|
|| |||| |||||||||| || ||| | ||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
4951356 |
gaatatttacttgcaaaacttctatctt-taaccttcaaaaccacttgtatttataggtgaggagtgtcttggtgatcaagggagaaactagagttgttg |
4951258 |
T |
|
| Q |
216 |
gacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgc |
309 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||| | |||||||||| |
|
|
| T |
4951257 |
gacacgtttttgataactgtctaaagtctcaattgatttctcttttcttcttaaaaataggaagaacgttctcataatgttatgtctgatttgc |
4951164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24794858 - 24794932
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgt |
75 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24794858 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgt |
24794932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 267
Target Start/End: Complemental strand, 27169216 - 27168983
Alignment:
| Q |
33 |
atgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgca |
131 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||| |||||||| ||||| |||||| |||||||||||||||||||| |||||| | | ||| || |
|
|
| T |
27169216 |
atgatccaaaagatataatgagagagcttgaaatttt-tttgtttgtgaagaactttgtatgtagtgatgattttcactt-gagagaatgcttactttca |
27169119 |
T |
|
| Q |
132 |
aaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatag |
231 |
Q |
| |
|
|||| ||| || |||||| | | ||||| ||||||||||||||||| |||||||| |||| | |||||||||| |||||||||| ||| || |
|
|
| T |
27169118 |
aaactcttatatagaaccttctagaccacttgtgtttataggtgaggagtgacttggtgatcaagagtgaaaatagaggtgttggacacgtttagtgcag |
27169019 |
T |
|
| Q |
232 |
ctgtccaaagtctcaattgatttctcttttcttctt |
267 |
Q |
| |
|
|||||||| | |||||||||||| ||||||||||| |
|
|
| T |
27169018 |
ctgtccaacgattcaattgatttcacttttcttctt |
27168983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 7784627 - 7784738
Alignment:
| Q |
160 |
cttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctctt |
259 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| |||| | |||||||| | ||||||||| |||||| |||| ||||||| |||||||||||| ||| |
|
|
| T |
7784627 |
cttgtatttataggtgagcagtgccttggtgatcaagagtgaaaatagtgttgttggacatgtttttggcagctttccaaagcttcaattgatttcactt |
7784726 |
T |
|
| Q |
260 |
ttcttctttaaa |
271 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7784727 |
ttcttctttaaa |
7784738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 267
Target Start/End: Original strand, 4361979 - 4362085
Alignment:
| Q |
160 |
cttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctctt |
259 |
Q |
| |
|
|||||||||||| || |||||| ||| |||| |||| | ||||| |||| ||||||||||||||||| |||||||||||| ||||||| |||| ||| |
|
|
| T |
4361979 |
cttgtatttatatatgtggagtgacttagtgatcaagtgtgaaaaaagagttgttggacacatttttg-cagctgtccaaagcttcaattggtttcactt |
4362077 |
T |
|
| Q |
260 |
ttcttctt |
267 |
Q |
| |
|
|||||||| |
|
|
| T |
4362078 |
ttcttctt |
4362085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 4361858 - 4361926
Alignment:
| Q |
37 |
tccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgatttt |
107 |
Q |
| |
|
||||| || |||| ||||||||||||| ||||| |||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
4361858 |
tccaaaaggtataatgagagagcttggtatttg-tttgtttgtgaagagc-ttgtatgtagtgatgatttt |
4361926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 24412704 - 24412307
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
24412704 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatacagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtga |
24412605 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24412604 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
24412505 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
24412504 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
24412405 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24412404 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
24412307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 30445141 - 30445538
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
30445141 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtga |
30445240 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30445241 |
tgattttcactttgagagatattagctttcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
30445340 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
30445341 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaacgttctcagaatgttcttt |
30445440 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30445441 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30445538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 30454513 - 30454910
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
30454513 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtga |
30454612 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30454613 |
tgattttcactttgagagatattagctttcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
30454712 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
30454713 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaacgttctcagaatgttcttt |
30454812 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30454813 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30454910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 30459571 - 30459968
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
30459571 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtga |
30459670 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459671 |
tgattttcactttgagagatattagctttcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
30459770 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
30459771 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaacgttctcagaatgttcttt |
30459870 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30459871 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30459968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 18568914 - 18568517
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18568914 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtga |
18568815 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18568814 |
tgattttcactttgagagatattagctttcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
18568715 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
18568714 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttaaaaatagccagaacgttctcagaatgttcttt |
18568615 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
18568614 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtgtaacttgcagtccacttctgatgatgtc |
18568517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 24422153 - 24421767
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
24422153 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatacagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtga |
24422054 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24422053 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
24421954 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24421953 |
aaaatagagctgctggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatag-----------ccagaatgttcttt |
24421865 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24421864 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
24421767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 22489061 - 22488686
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22489061 |
tttgagttttacaatag-caaattcaagagagaagatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
22488963 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22488962 |
tgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttcaaagacccttgtatttataggtgaggagtgtcttggtgatcaagggag |
22488863 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
22488862 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
22488763 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgc |
378 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22488762 |
ctgatttgcctggctttgaaagcactgttgc-ttgcttgcacatgagataaccagctgtaatgagctgtataacttgc |
22488686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 4635821 - 4635442
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| ||||| || ||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
4635821 |
tttgagttttacaatag-caaattcgaaagagaagatccaagagatatagtgagggagcttggaatttgctttgtttgc----------------agtga |
4635739 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4635738 |
tgattttcacttagagagatattagcttgcaaaactctagcttatgaccttcaaagacccttgtatttataggtgaggagtgtcttggtgatcaagggag |
4635639 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| ||| ||| |||||||||| |
|
|
| T |
4635638 |
aaaatagagctgttggatgcgtttttgatagttgtccaaagtctcaattgatttttcttttcttctttaaaatagctagaatgttctcaaaatgttcttt |
4635539 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||||||||| |||| |||||| ||||||||| ||||||||||| || |||| |||||||||| |
|
|
| T |
4635538 |
ctgatttgcctggctttgaaagcactattgc-ttgcttgcgcgtgagagaaccagttgtaatgagttgtataacttgttgcgcactgctgatgatgtc |
4635442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 369
Target Start/End: Original strand, 24278813 - 24278987
Alignment:
| Q |
195 |
agggagaaaatagagctgttggacacatttt-tgatagctgtccaaagtctcaattgatttctcttttcttcttt-aaaatagtcagaacgttttcagaa |
292 |
Q |
| |
|
||||||||||||||| |||||||||| |||| ||||||||||||||| ||||| ||||||||||| ||||||||| ||||||| ||||||||| ||| || |
|
|
| T |
24278813 |
agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa |
24278911 |
T |
|
| Q |
293 |
tgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgt |
369 |
Q |
| |
|
|||| | |||||||||||| |||||| ||| |||||| ||||||| ||||||| ||||| |||||||| |||| |
|
|
| T |
24278912 |
tgttgtgtctgatttgcctaactttgcttgcattgttgc-ttgcttgtgcatgagagtaccagttgtaatgaactgt |
24278987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 369
Target Start/End: Complemental strand, 24383401 - 24383227
Alignment:
| Q |
195 |
agggagaaaatagagctgttggacacattttt-gatagctgtccaaagtctcaattgatttctcttttcttcttt-aaaatagtcagaacgttttcagaa |
292 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||| ||||||| ||||||||| ||| || |
|
|
| T |
24383401 |
agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa |
24383303 |
T |
|
| Q |
293 |
tgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgt |
369 |
Q |
| |
|
|||| | |||||||||||| |||||| ||| |||||| ||||||| ||||||| ||||| |||||||| |||| |
|
|
| T |
24383302 |
tgttgtgtctgatttgcctaactttgcttgcattgttgc-ttgcttgtgcatgagagtaccagttgtaatgaactgt |
24383227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 22118443 - 22118518
Alignment:
| Q |
35 |
gatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactt |
112 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
22118443 |
gatccaagagatataatgaga--gcttggaatttgatttgtttgtgaagagctttgtatgtagtgatgattttcactt |
22118518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 23895928 - 23896325
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23895928 |
tttgagttttacaagaggcaaattcaagagagaagatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
23896027 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23896028 |
tgattttcactttgagagatattagcttacaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggag |
23896127 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
23896128 |
aaaatagagctgttggacacgtttttgatagttgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
23896227 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
23896228 |
ctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgctgcccacttctgatgatgtc |
23896325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 18420427 - 18420031
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18420427 |
tttgagttttacaagag-caaattcaagtgagaagatccaagagatatagtgagagagctttgaatttgctttgtttgcgaagagctttgtttgtagtga |
18420329 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18420328 |
tgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
18420229 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
18420228 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
18420129 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18420128 |
ctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
18420031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 45 - 298
Target Start/End: Complemental strand, 14102022 - 14101770
Alignment:
| Q |
45 |
atatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaacacttgctt |
143 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| ||| |||||| ||||| |||||||||||||||||||| |||| | |||| |||| ||||| ||||| | |
|
|
| T |
14102022 |
atatagtgagagag-ttggagtttgttttaattgtgaagagttttgtatgtagtgatgattttcactt-gagataatatttgctttaaaaactcttgcat |
14101925 |
T |
|
| Q |
144 |
atgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctgtccaaagtc |
243 |
Q |
| |
|
| || |||||| | |||||||||||||||||||||| |||||||| |||| | |||||||||| ||||||| || |||||| |||||||||||| |
|
|
| T |
14101924 |
ttaacattcaaaaccaattgtatttataggtgaggagtgccttggtgatcaagagtgaaaatagagttgttggatacgtttttggcagctgtccaaagct |
14101825 |
T |
|
| Q |
244 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttct |
298 |
Q |
| |
|
|||||||||||| ||||||||| |||||| | |||||||| |||||||||||| |
|
|
| T |
14101824 |
tcaattgatttcacttttcttcattaaaacgggaagaacgttctcagaatgttct |
14101770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 12173144 - 12173040
Alignment:
| Q |
162 |
tgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctctttt |
261 |
Q |
| |
|
||||||||||| || ||||||| ||||||| || |||||||||| |||||| ||||||||| |||| | |||||||| |||||||||||| ||||| |
|
|
| T |
12173144 |
tgtatttatagatgtggagtgtgttggtgataaactatgaaaatagagttgttgggcacattttt-atagatatccaaagtttcaattgatttcactttt |
12173046 |
T |
|
| Q |
262 |
cttctt |
267 |
Q |
| |
|
|||||| |
|
|
| T |
12173045 |
cttctt |
12173040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 3409 - 3012
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
3409 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtga |
3310 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3309 |
tgattttcactttgacagatattagcttacaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
3210 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
3209 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
3110 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3109 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
3012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 7789390 - 7789787
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
7789390 |
tttgagttttacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtga |
7789489 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7789490 |
tgattttcactttgacagatattagcttacaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
7789589 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
7789590 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
7789689 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7789690 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
7789787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 20713929 - 20713818
Alignment:
| Q |
18 |
gcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgaga |
117 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20713929 |
gcaaattcgaaagagaagatccaagagatatagtgagagagcttggaattttctttgtttgcgaagagctttgtttgtagtgatgattttcacttagaga |
20713830 |
T |
|
| Q |
118 |
gatattagcttg |
129 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20713829 |
gatattagcttg |
20713818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 15833798 - 15833720
Alignment:
| Q |
33 |
atgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactt |
112 |
Q |
| |
|
||||||||| ||||||| |||||| ||||| |||||| |||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
15833798 |
atgatccaaaagatataatgagagggcttgcaatttg-tttgtttgtgaggagctttgtatgtagtgatgattttcactt |
15833720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 15827476 - 15827408
Alignment:
| Q |
43 |
agatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactt |
112 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||||||| ||| | |||||| |||||||||||||||||||| |
|
|
| T |
15827476 |
agatataatgagatagcttggaatttg-tttgtttgtgaaaaactttgtatgtagtgatgattttcactt |
15827408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 31135 - 31516
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31135 |
tttgagttttacaagaggcaaattcaagagagaagatccaagagatatagtgagagagcttggaatttgctt----------------tgtttgtagtga |
31218 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31219 |
tgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaacaagggag |
31318 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
31319 |
aaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
31418 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
31419 |
ctgatttgcctggctttgaaagcactgttgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcccacttctgatgatgtc |
31516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 36 - 311
Target Start/End: Complemental strand, 9887 - 9612
Alignment:
| Q |
36 |
atccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaa |
134 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||| ||||| |
|
|
| T |
9887 |
atccaagtgatatagtgagagagcttgaaatttgctttgtttgcgaagagctttgtttgtagtgatgtttttcactt-gagagaatattttctttcaaaa |
9789 |
T |
|
| Q |
135 |
cacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctg |
234 |
Q |
| |
|
| ||||| | | ||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||| |
|
|
| T |
9788 |
ctcttgcctttaaccttcaaaactatttgtatatataggtgaggagtgtcttggtgatcaagggtgaaaatagagttgatggacacatttttgatagctg |
9689 |
T |
|
| Q |
235 |
tccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcct |
311 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||| ||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
9688 |
tccaaagtctcatttgttttcacttttcttcttaaaaatagctagaacgttctcagaatgttctgtctgatttgcct |
9612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 89 - 398
Target Start/End: Complemental strand, 413086 - 412777
Alignment:
| Q |
89 |
tgtttgtagtgatgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttgg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
413086 |
tgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttgg |
412987 |
T |
|
| Q |
189 |
tgaccaagggagaaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttc |
288 |
Q |
| |
|
||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
412986 |
tgatcaagggagaaaatagagttgttggactcttttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctc |
412887 |
T |
|
| Q |
289 |
agaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccactta |
388 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
412886 |
ataatgttctttctgatttgtctgactttgaaagcactattgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcccacttc |
412787 |
T |
|
| Q |
389 |
tgatgatgtc |
398 |
Q |
| |
|
|||||||||| |
|
|
| T |
412786 |
tgatgatgtc |
412777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 26433 - 26812
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26433 |
tttgagttttacaagag-caaattcaagagagaagatccaagggatatagtgagagagcttggaatttgctt----------------tgtttgtagtga |
26515 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26516 |
tgattttcacttagagagatattagcttgcaaaactcttacttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggag |
26615 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26616 |
aaaatagagatgttggacacatttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttcttt |
26715 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
26716 |
ctgatttgtctggctttgaaagcactgttgc-ttgtatgcgcatgagttaatcagctgtaatgagctgtataacttgctgcccaatgctgatgatgtc |
26812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 24023054 - 24023428
Alignment:
| Q |
1 |
tttgagttgtacaagaggcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtga |
100 |
Q |
| |
|
|||||||| ||||| || ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24023054 |
tttgagttttacaatag-caaattcgaaagagaagatccaagagatatagtgagagagcttggaatttgctttatttgcgaagagctttgtttgtagtga |
24023152 |
T |
|
| Q |
101 |
tgattttcactttgagagatattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggag |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
24023153 |
tgattttcacttagagagatattagcttgcaaaagtcttggttataaccttcaaaagcccttgtatttataggtgaggagtgtcttagtgatcaagggag |
24023252 |
T |
|
| Q |
201 |
aaaatagagctgttggacacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttcttt |
300 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| | |
|
|
| T |
24023253 |
aaaatagagttgttggacacgtttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttcttagaatgttctgt |
24023352 |
T |
|
| Q |
301 |
ctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttg |
377 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||| ||||||| |
|
|
| T |
24023353 |
ctgaattgccttactttgaaagcactgttgcttt-cttgcgcgtgagagaaccaactgtaatgagctgtttaacttg |
24023428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 29 - 398
Target Start/End: Original strand, 31710805 - 31711162
Alignment:
| Q |
29 |
agagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagctt |
128 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31710805 |
agagaagatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagctt |
31710904 |
T |
|
| Q |
129 |
gcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttga |
228 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| | ||||||| |
|
|
| T |
31710905 |
gcaaaactcttacttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagtgagaaaatagagttgttggacgcgtttttga |
31711004 |
T |
|
| Q |
229 |
tagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgt |
328 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
31711005 |
tagttgtccaaagtctcaattgatttctcttttcttcttaaaaatag-----------ccagaatgttctttctgattttcctggctttgaaagcactgt |
31711093 |
T |
|
| Q |
329 |
tgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
398 |
Q |
| |
|
||| |||||||||| |||| |||||| ||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
31711094 |
tgc-ttgcttgcgcgtgagagaaccagttgtaatgagctgtataacttgttgcccaatgctgatgatgtc |
31711162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 43 - 333
Target Start/End: Complemental strand, 14272889 - 14272600
Alignment:
| Q |
43 |
agatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaacacttgc |
141 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||| |||||| ||||| ||||||||||||||||| || ||||| | || |||| |||||| ||| | |
|
|
| T |
14272889 |
agatatagtgagagag-ttggagtttgttttgtttgtgaagagttttgtatgtagtgatgattttca-ttcaagagaatgtttgctttcaaaactcttac |
14272792 |
T |
|
| Q |
142 |
ttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacatttttgatagctgtccaaag |
241 |
Q |
| |
|
| | |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
14272791 |
ctttaaccttcaaagacccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaag |
14272692 |
T |
|
| Q |
242 |
tctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctt |
333 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||| |||||||| |
|
|
| T |
14272691 |
tctcaattgatttctcttttctacttataaatagccagaacgttttcagaatgttctgtctgaattgcctaactttgaaagcattgttgctt |
14272600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 15810309 - 15810659
Alignment:
| Q |
18 |
gcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgaga |
117 |
Q |
| |
|
|||||||| | ||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
15810309 |
gcaaattcgaaagagaagatgcaagagatatagtgagagagcttgaaatttgctttgtttgcgaggagctttgtttgtagtgatgtttttcactt-gaga |
15810407 |
T |
|
| Q |
118 |
ga-tattagcttgcaaaacacttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttgg |
216 |
Q |
| |
|
|| |||| ||| |||||| ||||| | | | |||||| | ||||||||||||||||| |||||||||||||| ||| || | |||||||| |||||| |
|
|
| T |
15810408 |
gaatattttctttcaaaactcttgcctttaaaattcaaaaccacttgtatttataggtgatgagtgtcttggtgatcaatggtgcaaatagagttgttgg |
15810507 |
T |
|
| Q |
217 |
acacatttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactt |
316 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||| | | |||||||||| | |||||||||| | |||| |
|
|
| T |
15810508 |
acacatttttgatagctgtccaaagtcctaattgatttcatttttcttcttaaaaatagacagaatgatctcagaatgttatgtctgatttgcataactt |
15810607 |
T |
|
| Q |
317 |
tgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgt |
369 |
Q |
| |
|
|| |||||||||| ||||||||| |||| |||||||||||||||||||| |
|
|
| T |
15810608 |
tgcttgcactgttgc-ttgcttgcgagtgagagaaccagctgtaatgagctgt |
15810659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 40999361 - 40999455
Alignment:
| Q |
18 |
gcaaattcaagagagatgatccaagagatatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactt |
112 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
40999361 |
gcaaattcgaaagagaagatccaagagatatagtgagagagcttggaatttactttgtttgcgaagagctttgtatgtagtgatgtttttcactt |
40999455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 312
Target Start/End: Original strand, 41000835 - 41001003
Alignment:
| Q |
147 |
accttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacac---atttttgatagctgtccaaagtc |
243 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| |||||||| |||| | |||||||||| |||||||||| ||||| |||| ||||||||||| |
|
|
| T |
41000835 |
accttcaaaaccacttgtatttataggtgaggagtgccttggtgatcaagagtgaaaatagagatgttggacacgtttttttttatagatgtccaaagtc |
41000934 |
T |
|
| Q |
244 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctg |
312 |
Q |
| |
|
||| |||||||| ||||||||||| ||| | | ||||| | | |||||||||| | ||||||||||||| |
|
|
| T |
41000935 |
tcatttgatttcacttttcttcttaaaattgggcagaaagatctcagaatgttatgtctgatttgcctg |
41001003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University