View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_7 (Length: 399)
Name: NF6879_low_7
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 24 - 387
Target Start/End: Original strand, 40441914 - 40442277
Alignment:
| Q |
24 |
tgagtatgaggtatatgtaaatcaaatgctaataatgttattgctccttggtcggtcatgcatagtcatctaactggtttatatcctgcattctggtagg |
123 |
Q |
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| T |
40441914 |
tgagtatgaggtatatgtaaatcaaatgctaataatgttattgctccttggtcggtcatgcatagtcatctaactggtttatatcctgcattctggtagg |
40442013 |
T |
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| Q |
124 |
tatctctgcattctgcattatagaacctttggtaggttaagattcaagctttgaaacacctcgactcattatcattgcttgattatactgatgcatcttt |
223 |
Q |
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| T |
40442014 |
tatctctgcattctgcattatagaacctttggtaggttaagattcaagctttgaaacacctcgactcattatcattgcttgattatactgatgcatcttt |
40442113 |
T |
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| Q |
224 |
acttgcgtacaaattttcttcacaaaattttaatgagtatacaaattttcaagcacacggagtatgatagaaactaaaagtggaatccacttgtcttaac |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442114 |
acttgcgtacaaattttcttcacaaaattttaatgagtatacaaattttcaagcacacggagtatgatagaaactaaaagtggaatccacttgtcttaac |
40442213 |
T |
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| Q |
324 |
tcttatccctggaatctgtaggtacaacacaaccacacaatcttttaccaacttgatcaatatt |
387 |
Q |
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| T |
40442214 |
tcttatccctggaatctgtaggcacaacacaaccacacaatcttttaccaacttgatcaatatt |
40442277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 18812828 - 18812934
Alignment:
| Q |
145 |
agaacctttggtaggttaagattcaagctttgaaacacctcgactcattatcattgcttgattatactgatgcatctttacttgcgtacaaattttcttc |
244 |
Q |
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||||| |||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||| | |||||||||||||| |
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| T |
18812828 |
agaacatttgataggttaagatttaagctttgaaacatctcgactcattattattgcttgattatattgatgcacctttacttacatacaaattttcttc |
18812927 |
T |
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| Q |
245 |
acaaaat |
251 |
Q |
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||||||| |
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| T |
18812928 |
acaaaat |
18812934 |
T |
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