View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6880_high_1 (Length: 815)

Name: NF6880_high_1
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6880_high_1
NF6880_high_1
[»] chr3 (19 HSPs)
chr3 (21-801)||(12735526-12736302)
chr3 (108-264)||(32579655-32579811)
chr3 (614-746)||(38773527-38773665)
chr3 (620-723)||(25556453-25556562)
chr3 (676-766)||(28451804-28451896)
chr3 (661-762)||(46515777-46515880)
chr3 (676-766)||(972407-972499)
chr3 (662-764)||(12568681-12568785)
chr3 (662-764)||(13545145-13545249)
chr3 (676-762)||(21490370-21490458)
chr3 (614-765)||(21290150-21290308)
chr3 (684-764)||(13863686-13863767)
chr3 (683-747)||(28945837-28945902)
chr3 (664-724)||(42709898-42709959)
chr3 (605-656)||(30352896-30352947)
chr3 (676-746)||(36923594-36923665)
chr3 (676-765)||(37238853-37238944)
chr3 (683-747)||(50699810-50699875)
chr3 (676-766)||(43310338-43310430)
[»] scaffold0464 (1 HSPs)
scaffold0464 (21-801)||(6639-7404)
[»] chr7 (20 HSPs)
chr7 (108-264)||(19888504-19888660)
chr7 (108-264)||(19778723-19778879)
chr7 (664-762)||(6647514-6647614)
chr7 (108-226)||(19351793-19351911)
chr7 (132-258)||(19357055-19357181)
chr7 (168-259)||(19879702-19879793)
chr7 (614-762)||(31418045-31418198)
chr7 (664-763)||(39854165-39854265)
chr7 (613-766)||(21388032-21388192)
chr7 (164-242)||(19721197-19721275)
chr7 (161-257)||(19598578-19598674)
chr7 (676-766)||(38073659-38073751)
chr7 (647-766)||(45278695-45278821)
chr7 (614-731)||(10679130-10679253)
chr7 (647-745)||(38652690-38652788)
chr7 (612-765)||(40211751-40211910)
chr7 (675-723)||(31622750-31622798)
chr7 (676-766)||(41888880-41888972)
chr7 (619-729)||(46610266-46610381)
chr7 (676-721)||(4020572-4020617)
[»] scaffold1157 (1 HSPs)
scaffold1157 (614-765)||(1885-2043)
[»] chr2 (19 HSPs)
chr2 (113-309)||(18914343-18914536)
chr2 (614-729)||(27414071-27414191)
chr2 (111-279)||(18909593-18909758)
chr2 (110-274)||(18921488-18921649)
chr2 (613-766)||(11941489-11941644)
chr2 (603-729)||(44721360-44721491)
chr2 (620-715)||(3888767-3888867)
chr2 (626-729)||(19159538-19159646)
chr2 (621-718)||(36210373-36210478)
chr2 (664-765)||(6590626-6590729)
chr2 (676-743)||(10500328-10500396)
chr2 (676-766)||(32227431-32227523)
chr2 (664-763)||(32656243-32656344)
chr2 (648-731)||(28813423-28813511)
chr2 (676-738)||(33830307-33830370)
chr2 (676-761)||(35310195-35310282)
chr2 (648-724)||(8333439-8333520)
chr2 (683-747)||(12497287-12497352)
chr2 (683-728)||(45075689-45075734)
[»] chr6 (6 HSPs)
chr6 (124-264)||(14748518-14748657)
chr6 (613-766)||(154183-154343)
chr6 (614-701)||(9464597-9464690)
chr6 (665-747)||(32785841-32785924)
chr6 (614-745)||(33972611-33972748)
chr6 (614-693)||(7269696-7269781)
[»] chr1 (18 HSPs)
chr1 (614-729)||(51672749-51672869)
chr1 (619-765)||(2614797-2614950)
chr1 (614-762)||(7648692-7648847)
chr1 (620-742)||(13132130-13132258)
chr1 (676-766)||(3491499-3491591)
chr1 (661-737)||(49872191-49872268)
chr1 (683-766)||(8550386-8550471)
chr1 (676-765)||(13352310-13352402)
chr1 (684-766)||(298195-298279)
chr1 (664-731)||(27211335-27211402)
chr1 (619-762)||(50746016-50746167)
chr1 (619-766)||(52141501-52141655)
chr1 (632-731)||(2692406-2692511)
chr1 (676-736)||(5198820-5198881)
chr1 (685-762)||(21276636-21276715)
chr1 (165-228)||(43986909-43986972)
chr1 (164-205)||(43907684-43907725)
chr1 (676-721)||(48722765-48722810)
[»] chr5 (9 HSPs)
chr5 (603-765)||(3344873-3345042)
chr5 (614-745)||(2903368-2903506)
chr5 (613-729)||(42655922-42656043)
chr5 (613-761)||(25037262-25037417)
chr5 (619-746)||(32135824-32135956)
chr5 (614-712)||(28085220-28085323)
chr5 (620-713)||(13789633-13789731)
chr5 (623-723)||(10333823-10333930)
chr5 (664-728)||(39796032-39796096)
[»] chr4 (15 HSPs)
chr4 (614-766)||(17268796-17268954)
chr4 (614-762)||(52278991-52279146)
chr4 (667-765)||(26889935-26890035)
chr4 (676-766)||(10109215-10109307)
chr4 (619-721)||(11348010-11348118)
chr4 (635-762)||(32055045-32055179)
chr4 (683-766)||(22409423-22409508)
chr4 (685-764)||(26533186-26533267)
chr4 (664-766)||(51675870-51675973)
chr4 (676-766)||(32318512-32318603)
chr4 (614-663)||(26889583-26889632)
chr4 (677-763)||(4960442-4960534)
chr4 (661-765)||(14136633-14136739)
chr4 (684-749)||(20574954-20575020)
chr4 (676-736)||(24010275-24010336)
[»] chr8 (17 HSPs)
chr8 (614-766)||(17867438-17867597)
chr8 (599-723)||(24991769-24991898)
chr8 (667-766)||(2539831-2539931)
chr8 (664-721)||(31451307-31451364)
chr8 (625-721)||(38730215-38730316)
chr8 (614-715)||(40037507-40037614)
chr8 (605-663)||(2540217-2540275)
chr8 (164-205)||(42693665-42693706)
chr8 (625-702)||(3447429-3447511)
chr8 (683-763)||(11257854-11257936)
chr8 (684-764)||(37456109-37456191)
chr8 (664-763)||(41128125-41128226)
chr8 (676-747)||(7107518-7107590)
chr8 (676-743)||(8072526-8072594)
chr8 (684-766)||(30069797-30069881)
chr8 (683-728)||(1042800-1042845)
chr8 (676-736)||(16037307-16037368)
[»] scaffold0154 (1 HSPs)
scaffold0154 (664-766)||(36407-36511)
[»] scaffold0524 (1 HSPs)
scaffold0524 (676-721)||(1494-1539)
[»] scaffold0102 (1 HSPs)
scaffold0102 (676-762)||(21233-21321)


Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 21 - 801
Target Start/End: Original strand, 12735526 - 12736302
Alignment:
Q  21 ggactctccagcaaacgacttactggaatgggtatgagactgtaatcaaagttgcccttgtctggtactcggaatgatctaagcaaaaggtgggtgttcc 120  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  12735526 ggactctccagcaaacgacttacaggaatggatatgagactgtaatcaaagttgccccagtctggtactcggaatgatcttagcaaaaggtgggtgttcc 12735625  T
Q  121 gaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcac 220  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||    
T  12735626 gaggcgatcgccgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcaaacacatttgaattgcatcaaagttttgac 12735725  T
Q  221 aggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcgaggttgtagcgcagcagtttgaaggcggagactttgtcgaataaggg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||    
T  12735726 aggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcgaggttgtagcgcagcagtatgaaggcggagactttgtcgaaggaagg 12735825  T
Q  321 caattcatagtagctatgttatgtatttgggtaactaaaaagaaagcagtgatgttgttgaaaactgaaatcgaaattgaaagtgtggaatcctaaccta 420  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12735826 caattcatagtagcaatgttatgtattttggtcactaaaaagaaagcagtgatgttgttgaaaactgaaatcgaaattgaaagtgtggaaccctaaccta 12735925  T
Q  421 ataaacctttgcggaatttcacaatcattatcacgaggtttctttacggaaaagtagtaagaggttaaattttgttttataccaacnnnnnnngggtttc 520  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  12735926 ataaacctttgcggaatttcacaatcatcatcacgaggtttctttacggaaaagtagtaagaggttaaattttgttttataccaacaaaaaaagggtttc 12736025  T
Q  521 aaacacggagacgtacttctactggacatcgtggatacattcatctatttatttaatttaagggtcgtgttaaattatattatgcccttggaacacaggt 620  Q
    ||||| |||||||||||||||| ||||||| |||||||||||    |||||||||||||||||||||||||||      |||||||||| ||||||| ||    
T  12736026 aaacaaggagacgtacttctaccggacatcatggatacattc----atttatttaatttaagggtcgtgttaa-----cttatgcccttagaacacatgt 12736116  T
Q  621 taagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataattt 715  Q
    ||||| ||||||| |||||||| || ||||| |||||||||||     |||||||||||||||| || | ||||||||| |||||| |||||||||||||    
T  12736117 taagcgttaaatttttgccactgatggtaagcattaattgaaaaaaattaatattagatttttttaaaagtaaattaacgcaattttcgagacataattt 12736216  T
Q  716 ttattagtgaaatcttaacatatgccctaagga-ccaagttaacatttccctctnnnnnnntatactttattggattattattgata 801  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||||| ||| |       ||||||||||||||||||||||||||    
T  12736217 ttattagtggaatgttaacatatgccctaaggacccaagttaacattttcct-ttaaaaaatatactttattggattattattgata 12736302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 108 - 264
Target Start/End: Original strand, 32579655 - 32579811
Alignment:
Q  108 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 207  Q
    |||||||||||||| |||||||| ||||| || | ||| ||||||   ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  32579655 aggtgggtgttccgtggcgatcgatgaagatgaaatttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgca 32579754  T
Q  208 tcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaagga 264  Q
    | |||||||| |||||||| ||||| || ||||| ||||| ||||||||||| ||||    
T  32579755 taagagttttgacaggaaggcgtgataggatttccacgatgagttcatcaaggagga 32579811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 614 - 746
Target Start/End: Complemental strand, 38773665 - 38773527
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 708  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||     ||||||||||| ||||||||| ||||||||| |||||| | ||||    
T  38773665 cacatgttaagcattaaattcttaccactaatggtaagtattaattgaaaataattaatattagatattttgaacattaaattaacgcaattttcaagac 38773566  T
Q  709 ataatttttattagtgaaa-tcttaacatatgccctaag 746  Q
    | |||||  |||||||||| |||||| || |||||||||    
T  38773565 aaaatttccattagtgaaattcttaatatgtgccctaag 38773527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 620 - 723
Target Start/End: Complemental strand, 25556562 - 25556453
Alignment:
Q  620 ttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaatttccgagacataat 713  Q
    |||||||||||||||||| |||||||  ||||||||||||||||      |||||||||||||||||| || |||| || | |||||||||| |||||||    
T  25556562 ttaagcattaaattcttgtcactaatgataagtattaattgaaaaaaaattaatattagattttttgagcagtaaactatcgcaatttccgatacataat 25556463  T
Q  714 ttttattagt 723  Q
    ||||||||||    
T  25556462 ttttattagt 25556453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 676 - 766
Target Start/End: Original strand, 28451804 - 28451896
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    ||||||| |||||||||||||||||||| | | ||||||||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||    
T  28451804 ttttgaataataaattaacacaatttccaatatataatttttattagtggaattcttaacatgtgccctaagggcacaagttaacatttccct 28451896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 661 - 762
Target Start/End: Complemental strand, 46515880 - 46515777
Alignment:
Q  661 aaataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatc-ttaacatatgccctaaggac-caagttaac 758  Q
    ||||||||||| |||||||||  |||||||||||||||||| ||| |||  |||||||||||||||||| |||||||||| | ||||||| |||||| ||    
T  46515880 aaataatattaaattttttgagaaataaattaacacaattttcgatacaatatttttattagtgaaatcattaacatatgtcttaaggacacaagttcac 46515781  T
Q  759 attt 762  Q
    ||||    
T  46515780 attt 46515777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 676 - 766
Target Start/End: Complemental strand, 972499 - 972407
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    |||| ||||||||||||| ||| ||||| | || |||||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||    
T  972499 ttttaaacaataaattaatacagtttccaatacctaatttttattagtggaattcttaacatgtgccctaaggacacaagttaacatttccct 972407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 662 - 764
Target Start/End: Original strand, 12568681 - 12568785
Alignment:
Q  662 aataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaaca 759  Q
    |||| ||||| || |||||| ||||||||||| ||||||| | | | ||||||||||||| ||||| ||||||||| |||||||||| | ||||||||||    
T  12568681 aatagtattaaatattttgagcaataaattaagacaatttacaataaataatttttattaatgaaattcttaacatgtgccctaagggcacaagttaaca 12568780  T
Q  760 tttcc 764  Q
    |||||    
T  12568781 tttcc 12568785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 662 - 764
Target Start/End: Original strand, 13545145 - 13545249
Alignment:
Q  662 aataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaaca 759  Q
    |||| ||||| || |||||| ||||||||||| ||||||| | | | ||||||||||||| ||||| ||||||||| |||||||||| | ||||||||||    
T  13545145 aatagtattaaatattttgagcaataaattaagacaatttacaataaataatttttattaatgaaattcttaacatgtgccctaagggcacaagttaaca 13545244  T
Q  760 tttcc 764  Q
    |||||    
T  13545245 tttcc 13545249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 676 - 762
Target Start/End: Complemental strand, 21490458 - 21490370
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacattt 762  Q
    |||||||||||||||||||||||||||| | | ||||||| ||||||| ||| ||||||||| ||| |||||||| |||||||| ||||    
T  21490458 ttttgaacaataaattaacacaatttccaatatataatttatattagtggaattcttaacatgtgctctaaggacacaagttaatattt 21490370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 614 - 765
Target Start/End: Original strand, 21290150 - 21290308
Alignment:
Q  614 cacaggttaagcattaaatt-cttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 707  Q
    |||| ||||||||||||||| |||||||||||| ||||  ||||| |||||     |||||||| ||||||| | ||||||||||||| ||||||||| |    
T  21290150 cacatgttaagcattaaatttcttgccactaatggtaaa-attaaatgaaaaaaattaatattatattttttaagcaataaattaacataatttccgata 21290248  T
Q  708 cataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccc 765  Q
    |||||||| ||||| || |||  ||||||| |||| ||||| | ||| ||||||||||||    
T  21290249 cataatttctattaatggaatatttaacatgtgccataagggcacaaattaacatttccc 21290308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 764
Target Start/End: Original strand, 13863686 - 13863767
Alignment:
Q  684 aataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccctaaggaccaagttaacatttcc 764  Q
    |||||||||||||||||||| | ||| ||||  |||||||| ||| |||||||| ||||||||||  |||||||||||||||    
T  13863686 aataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccctaaggcacaagttaacatttcc 13863767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 683 - 747
Target Start/End: Complemental strand, 28945902 - 28945837
Alignment:
Q  683 caataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaagg 747  Q
    ||||||||||||||||||||| | |||| |||||||||||| ||| ||||||||| ||||||||||    
T  28945902 caataaattaacacaatttccaatacatgatttttattagtggaattcttaacatgtgccctaagg 28945837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 664 - 724
Target Start/End: Original strand, 42709898 - 42709959
Alignment:
Q  664 taatattagattttttgaacaataaattaacac-aatttccgagacataatttttattagtg 724  Q
    |||||||| || |||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  42709898 taatattaaatattttgatcaataaattaacactaatttccgatacataatttttattagtg 42709959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 605 - 656
Target Start/End: Original strand, 30352896 - 30352947
Alignment:
Q  605 cccttggaacacaggttaagcattaaattcttgccactaatagtaagtatta 656  Q
    ||||| ||||||| |||||||||||||||||||| |||||| ||||||||||    
T  30352896 cccttagaacacatgttaagcattaaattcttgctactaatggtaagtatta 30352947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 676 - 746
Target Start/End: Original strand, 36923594 - 36923665
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaag 746  Q
    |||||| ||||||||||||||||||||| | ||||||||| ||||||| ||| |||||| || |||||||||    
T  36923594 ttttgagcaataaattaacacaatttccaatacataatttctattagtggaattcttaatatgtgccctaag 36923665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 676 - 765
Target Start/End: Original strand, 37238853 - 37238944
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccc 765  Q
    |||| ||||||||||||||||||||||| | | ||||||| ||||| | ||| ||||||||| |||||| ||| | ||||||||||||||||    
T  37238853 ttttaaacaataaattaacacaatttccaaaaaataatttctattaatggaattcttaacatgtgcccttagggcacaagttaacatttccc 37238944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 747
Target Start/End: Original strand, 50699810 - 50699875
Alignment:
Q  683 caataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaagg 747  Q
    ||||||||||||||||||||| | |||| |||| ||||||| ||| ||||||||| ||||||||||    
T  50699810 caataaattaacacaatttccaatacatgatttctattagtggaattcttaacatgtgccctaagg 50699875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 766
Target Start/End: Complemental strand, 43310430 - 43310338
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccct-aaggaccaagttaacatttccct 766  Q
    |||||| ||||||||||||||||||||| | ||| ||||| ||||||| ||| ||||||||| ||| || ||||  ||||||| |||||||||    
T  43310430 ttttgagcaataaattaacacaatttccaatacaaaatttctattagtagaattcttaacatgtgctctaaaggcacaagttagcatttccct 43310338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 801
Target Start/End: Complemental strand, 7404 - 6639
Alignment:
Q  21 ggactctccagcaaacgacttactggaatgggtatgagactgtaatcaaagttgcccttgtctggtactcggaatgatctaagcaaaaggtgggtgttcc 120  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  | ||||| |||||||| |||| |||||||||||||||||||    
T  7404 ggactctccagcaaacgacttacaggaatggatatgagactgtaatcaaagttgccccagcctggttctcggaataatcttagcaaaaggtgggtgttcc 7305  T
Q  121 gaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7304 gaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttgac 7205  T
Q  221 aggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcgaggttgtagcgcagcagtttgaaggcggagactttgtcgaataaggg 320  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  ||||    
T  7204 aggaagtcgtgaaagaatttctacgataagttcgtcaagaaggactatcagcgacgttgtagcgcagcagtttgatggcggagactttgtcgaaggaggg 7105  T
Q  321 caattcatagtagctatgttatgtatttgggtaactaaaaagaaagcagtgatgttgttgaaaactgaaatcgaaattgaaagtgtggaatcctaaccta 420  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||   |||||||||            ||||||||||||| |||||||||    
T  7104 caattcattgtatctatgttatgtattttggtaactaaaaagaaagcagtgat---gttgaaaac------------tgaaagtgtggaaccctaaccta 7020  T
Q  421 ataaacctttgcggaatttcacaatcattatcacgaggtttctttacggaaaagtagtaagaggttaaattttgttttataccaacnnnnnnngggtttc 520  Q
    |||||||| ||||||||||||||||||| |||||||||||||| ||||||||   |||||||||||||||||||||||||||||||       |||||||    
T  7019 ataaacctctgcggaatttcacaatcatcatcacgaggtttctatacggaaa---agtaagaggttaaattttgttttataccaacaaaaaaagggtttc 6923  T
Q  521 aaacacggagacgtacttctactggacatcgtggata--cattcatctatttatttaatttaagggtcgtgttaaattatattatgcccttggaacacag 618  Q
    ||||| |||||||||||||||||||||| ||| ||||  |||  ||  || |||||||||||||||| ||| |||      || ||||||| |  ||||     
T  6922 aaacaaggagacgtacttctactggacaccgt-gatactcatggattcatctatttaatttaagggtagtgataa-----gttgtgcccttagcgcacat 6829  T
Q  619 gttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaatttccgagacataa 712  Q
    ||||||||||||||| ||  ||||||| |||||||||||||||||      |||||||| ||||||||| |||||||||||| |||||||| ||| ||||    
T  6828 gttaagcattaaatttttatcactaatggtaagtattaattgaaaaaaaattaatattatattttttgagcaataaattaacgcaatttccaagatataa 6729  T
Q  713 tttttattagtgaaat-cttaacatatgccct-aaggaccaagttaacatttccctctnnnnnnntatactttattggattattattgata 801  Q
    ||| ||||  || ||| |||||||| ||| || ||||  ||||||||||||||||| |       ||||||||||||||||||||||||||    
T  6728 tttctatttatggaatccttaacatgtgctctaaaggcacaagttaacatttccct-ttaaaaaatatactttattggattattattgata 6639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 7e-45; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 108 - 264
Target Start/End: Original strand, 19888504 - 19888660
Alignment:
Q  108 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 207  Q
    ||||| |||||||| ||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19888504 aggtgtgtgttccgcggcgaacgctgaagatggagtttggcgaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattgca 19888603  T
Q  208 tcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaagga 264  Q
    | |||||||| |||||||||||||| || || || ||||| ||||||||||| ||||    
T  19888604 taagagttttgacaggaagtcgtgacaggatatccacgatgagttcatcaaggagga 19888660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 108 - 264
Target Start/End: Complemental strand, 19778879 - 19778723
Alignment:
Q  108 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 207  Q
    ||||| ||||||||  ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  19778879 aggtgtgtgttccgctgcgatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccaagatttgcaaacacatttgaattgca 19778780  T
Q  208 tcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaagga 264  Q
    | |||||||| |||||||||||||| || || |||  ||| ||||||||||| ||||    
T  19778779 taagagttttgacaggaagtcgtgacaggatgtctgtgatgagttcatcaaggagga 19778723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 664 - 762
Target Start/End: Complemental strand, 6647614 - 6647514
Alignment:
Q  664 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaacatt 761  Q
    |||||||| || |||||||||||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||    
T  6647614 taatattaaatattttgaacaataaattaacacaattttctatacataatttttattagtgaaattcttaacatatgccataaggacacaagttaacatt 6647515  T
Q  762 t 762  Q
    |    
T  6647514 t 6647514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 19351793 - 19351911
Alignment:
Q  108 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 207  Q
    ||||||||||||||  |||| || | |||||||| ||| | |||||||||||||||||| || |||||| |||||||||| || ||||||||||||||||    
T  19351793 aggtgggtgttccgtcgcgaccggtaaaggtgcaatttggtgaaggaaggatcatgagaaatcagggttgtccatgatttacaaacacatttgaattgca 19351892  T
Q  208 tcagagttttcacaggaag 226  Q
    | |||||||| ||||||||    
T  19351893 taagagttttgacaggaag 19351911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 132 - 258
Target Start/End: Complemental strand, 19357181 - 19357055
Alignment:
Q  132 tgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtg 231  Q
    |||||||||| ||| | |||||||| ||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||| || ||||| || |    
T  19357181 tgaaggtgcaatttggtgaaggaagaatcatgagaaataagggttttccatgatttgcaaacgcatttgaattgcatcagagttttgacgggaagccgcg 19357082  T
Q  232 aaagaatttctacgataagttcatcaa 258  Q
    | ||||||||   ||| ||||||||||    
T  19357081 atagaatttcagtgatgagttcatcaa 19357055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 19879702 - 19879793
Alignment:
Q  168 attagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaag 259  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || |||  ||| |||||||||||    
T  19879702 attagggttttccaagatttgcaaacacatttgaattgcataagagttttgacaggaagtcgtgaaaggatgtctgtgatgagttcatcaag 19879793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 614 - 762
Target Start/End: Complemental strand, 31418198 - 31418045
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa----taatattagattttttgaacaataaattaacacaatttccgagaca 709  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||||||    |||||||| | ||||| |||||||||||||| ||||||  ||||||    
T  31418198 cacaggttaaacattaaattcttgccactggtagtaagtattaattgaaaaaattaatatta-aatttttaaacaataaattaacgcaatttttgagaca 31418100  T
Q  710 taatttttattagtgaaatc-ttaacatatgccctaaggac-caagttaacattt 762  Q
    |||||| ||||| || |||| ||||||| || | ||||| | |||||||||||||    
T  31418099 taatttctattaatggaatcattaacatgtgtcttaagggcacaagttaacattt 31418045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 664 - 763
Target Start/End: Original strand, 39854165 - 39854265
Alignment:
Q  664 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggaccaagttaacattt 762  Q
    |||||||| || |||||||||||||||||||||||||| | | ||||||||| ||||||| ||| ||||||||| ||||||||||  |||||||||||||    
T  39854165 taatattaaatattttgaacaataaattaacacaattttcaatacataatttatattagtagaattcttaacatgtgccctaaggcacaagttaacattt 39854264  T
Q  763 c 763  Q
    |    
T  39854265 c 39854265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 613 - 766
Target Start/End: Original strand, 21388032 - 21388192
Alignment:
Q  613 acacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 707  Q
    ||||| ||||||||||||||||||| || |||| |||| ||||||||||||     |||||||||| |||||||  |||||| ||||||||||| |||||    
T  21388032 acacatgttaagcattaaattcttgtcattaatggtaaatattaattgaaaaaaattaatattagaatttttgagtaataaagtaacacaattttcgaga 21388131  T
Q  708 cataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccct 766  Q
    |||||||| || || || ||| ||||| || || | ||||| | |||||||||||||||||    
T  21388132 cataatttctactaatggaatccttaagatgtgtcataagggcacaagttaacatttccct 21388192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 19721275 - 19721197
Alignment:
Q  164 agagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttct 242  Q
    |||||||||||||||| ||||||||||||||||||| | ||||||||||||||| | |||||| ||||| || ||||||    
T  19721275 agagattagggttttcaatgatttgcagacacatttcatttgcatcagagttttgaaaggaaggcgtgataggatttct 19721197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 161 - 257
Target Start/End: Original strand, 19598578 - 19598674
Alignment:
Q  161 atgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatca 257  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||  ||||  || ||||||||   ||| || ||||| |||||||||||||||    
T  19598578 atgagagattagggttttccatgacttgcagacgcatttgaattgcacaagagaatttacaggaaggaatgataggatttcaacgataagttcatca 19598674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 676 - 766
Target Start/End: Original strand, 38073659 - 38073751
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccct 766  Q
    |||||| ||||||||||||||||||||  | ||||||||| |||||| ||||| |||||||| |||||||||| | |||||||||||||||||    
T  38073659 ttttgagcaataaattaacacaatttctaatacataatttctattagagaaatgcttaacatgtgccctaagggcacaagttaacatttccct 38073751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 647 - 766
Target Start/End: Complemental strand, 45278821 - 45278695
Alignment:
Q  647 gtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgc 740  Q
    |||||||||||||||||     |||||||||||||||||| |||||||||||| ||||||  || ||||||||| |||||||| ||| ||||| || | |    
T  45278821 gtaagtattaattgaaaaaaattaatattagattttttgagcaataaattaacgcaatttttgaaacataatttctattagtggaatccttaagatgtac 45278722  T
Q  741 cctaaggac-caagttaacatttccct 766  Q
    ||||||| | |||||||| ||||||||    
T  45278721 cctaaggtcacaagttaatatttccct 45278695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 614 - 731
Target Start/End: Complemental strand, 10679253 - 10679130
Alignment:
Q  614 cacaggttaagcattaaatt-cttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 707  Q
    |||| ||||| ||||||||| |||| || ||||| ||||||||||||||||     |||||||  ||||||||| ||||||||||||||||||| ||| |    
T  10679253 cacatgttaaacattaaatttcttgtcattaataataagtattaattgaaaaaaattaatattgaattttttgagcaataaattaacacaattttcgata 10679154  T
Q  708 cataatttttattagtgaaatctt 731  Q
    ||  |||||||||| || ||||||    
T  10679153 caatatttttattattggaatctt 10679130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 647 - 745
Target Start/End: Original strand, 38652690 - 38652788
Alignment:
Q  647 gtaagtattaattgaaataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaa 745  Q
    ||||| ||| ||||||| || |||| || |||||||||||||||||||||| ||||| | ||||||||| ||||||| ||| ||||||||| ||||||||    
T  38652690 gtaagaatttattgaaaaaaaatta-atattttgaacaataaattaacacactttccaatacataatttctattagtggaattcttaacatgtgccctaa 38652788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 612 - 765
Target Start/End: Original strand, 40211751 - 40211910
Alignment:
Q  612 aacacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa----taatattagattttttgaacaataaattaacacaatttccgaga 707  Q
    |||||| ||||||||||||  |  | ||| |||||||||| ||| |||||||    |||||||| || |||||| ||||||||||| ||||||||| | |    
T  40211751 aacacatgttaagcattaatgttattccattaatagtaagaatttattgaaaaaattaatattaaatattttgagcaataaattaagacaatttccaata 40211850  T
Q  708 cataatttttattagt-gaaatcttaacatatgccctaagga-ccaagttaacatttccc 765  Q
    ||| |||| || |||| ||| | ||||||||||| |||||||  ||||||||||||||||    
T  40211851 catgatttataatagtagaatttttaacatatgctctaaggatacaagttaacatttccc 40211910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 723
Target Start/End: Original strand, 31622750 - 31622798
Alignment:
Q  675 tttttgaacaataaattaacacaatttccgagacataatttttattagt 723  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  31622750 tttttgaacaataaattaacacaattttcgatacataatttctattagt 31622798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 766
Target Start/End: Original strand, 41888880 - 41888972
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    |||||||||||||||||||||||||| | |  ||| |||| ||||| | ||| ||||| ||| |||||||||| | |||||||||||||||||    
T  41888880 ttttgaacaataaattaacacaattttcaatgcatgatttctattattggaattcttatcatgtgccctaagggcacaagttaacatttccct 41888972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 729
Target Start/End: Original strand, 46610266 - 46610381
Alignment:
Q  619 gttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataat 713  Q
    ||||| ||||||||| ||| || ||||||||||||||||| ||||     |||||||||| |||||||   || |||||| | |||||  ||||||||||    
T  46610266 gttaaacattaaatttttgacattaatagtaagtattaatagaaaaaaattaatattagaatttttgagtgattaattaatataatttttgagacataat 46610365  T
Q  714 ttttattagtgaaatc 729  Q
    || |||||||| ||||    
T  46610366 ttctattagtggaatc 46610381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 721
Target Start/End: Complemental strand, 4020617 - 4020572
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttatta 721  Q
    ||||||| |||||||| ||| ||||||||| |||||||||||||||    
T  4020617 ttttgaaaaataaattgacataatttccgatacataatttttatta 4020572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1157 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 614 - 765
Target Start/End: Original strand, 1885 - 2043
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 708  Q
    |||| ||||||||||| ||||||||||||||| |||| ||||||||||||     |||||||||||||||| | ||||||||||||||||||| ||||||    
T  1885 cacatgttaagcattacattcttgccactaatggtaattattaattgaaaaaaactaatattagattttttaagcaataaattaacacaattttcgagac 1984  T
Q  709 ataatttttattagtgaaatc-ttaacatatgccctaaggac-caagttaacatttccc 765  Q
    ||||||| |||||||| |||| ||||||| |||||||||| | ||||||||||||||||    
T  1985 ataatttctattagtggaatcattaacatgtgccctaagggcacaagttaacatttccc 2043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 113 - 309
Target Start/End: Original strand, 18914343 - 18914536
Alignment:
Q  113 ggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcaga 212  Q
    |||||| || || ||||| |||||||||| |||  ||||||||||||   |||| |||||||||||| |||||||||| || ||||| | ||||||||||    
T  18914343 ggtgtttcgtggtgatcgatgaaggtgcaatttgacgaaggaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcaga 18914439  T
Q  213 gttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcgaggttgtagcgcagcagtttgaaggcggagactttg 309  Q
    ||||| ||||||||||| ||||| |||||| | ||||||||||||||||||| || |||||| |||| | |||||  ||||||| ||||||||||||    
T  18914440 gttttgacaggaagtcgagaaaggatttctgcaataagttcatcaagaaggattaacagcgacgttggaacgcagttgtttgaatgcggagactttg 18914536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 614 - 729
Target Start/End: Original strand, 27414071 - 27414191
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 708  Q
    |||| |||||||||||||||||||||| |||| |||||||||||||||||     |||||||||||||||||| |||||||| ||| |||||||||||||    
T  27414071 cacatgttaagcattaaattcttgccattaatggtaagtattaattgaaaaaaattaatattagattttttgagcaataaatgaacgcaatttccgagac 27414170  T
Q  709 ataatttttattagtgaaatc 729  Q
    |||||||||||||||||||||    
T  27414171 ataatttttattagtgaaatc 27414191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 111 - 279
Target Start/End: Original strand, 18909593 - 18909758
Alignment:
Q  111 tgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatca 210  Q
    ||||||||||| || ||||| |||||||||| ||| |||||| ||||||   |||| |||||||||||| |||||||||| || ||||| | ||||||||    
T  18909593 tgggtgttccgtggtgatcggtgaaggtgcaatttggcgaagaaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatca 18909689  T
Q  211 gagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcgaggttg 279  Q
    ||||||| ||||||||||||||||| |||||| |||| ||||| |||||||||| || |||||| ||||    
T  18909690 gagttttgacaggaagtcgtgaaaggatttctgcgatgagttcgtcaagaaggattaacagcgatgttg 18909758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 18921488 - 18921649
Alignment:
Q  110 gtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatc 209  Q
    |||||||||||| |||||||| |||||||||| |||  ||||||||||||   |||| |||||||||||| |||||||||| || ||||| | |||||||    
T  18921488 gtgggtgttccgcggcgatcgatgaaggtgcattttgacgaaggaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatc 18921584  T
Q  210 agagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcga 274  Q
    |||||||| || ||||| |||||||| |||||| |||| || ||||||||||||| || ||||||    
T  18921585 agagtttttactggaagacgtgaaaggatttctgcgatgagctcatcaagaaggattaacagcga 18921649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 613 - 766
Target Start/End: Complemental strand, 11941644 - 11941489
Alignment:
Q  613 acacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaatttccgag 706  Q
    ||||| |||||||||||||||||||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||| |||||| ||||    
T  11941644 acacatgttaagcattaaattcttgccactaatgataagtattaattgaaaaaaaattaatattaaattttttgaacaataaattaacgcaattttcgag 11941545  T
Q  707 acataatttttattagtgaaat-cttaacatatgccct-aaggaccaagttaacatttccct 766  Q
    | |      ||||||||| ||| |||||||| |||||| ||||  |||||||||||||||||    
T  11941544 aaa------ttattagtgtaatccttaacatgtgccctaaaggcacaagttaacatttccct 11941489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 603 - 729
Target Start/End: Original strand, 44721360 - 44721491
Alignment:
Q  603 tgcccttggaacacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacaca 697  Q
    ||||||| || |||| |||||||||||||||||| |||||||| ||||| |||||||||||     ||||||||  |||||| |  |||||||||||| |    
T  44721360 tgcccttagagcacatgttaagcattaaattcttaccactaatggtaagcattaattgaaaaaaattaatattaactttttttagtaataaattaacaga 44721459  T
Q  698 atttccgagacataatttttattagtgaaatc 729  Q
    |||| ||| |||||||||||||||||||||||    
T  44721460 attttcgatacataatttttattagtgaaatc 44721491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 620 - 715
Target Start/End: Original strand, 3888767 - 3888867
Alignment:
Q  620 ttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatt 714  Q
    |||| |||||||||||||||||||||  |||||||||||| |||     |||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  3888767 ttaaacattaaattcttgccactaatgataagtattaattaaaaaaaattaatattagattttttaagcaataaattaacgcaatttccgagacataatt 3888866  T
Q  715 t 715  Q
    |    
T  3888867 t 3888867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 626 - 729
Target Start/End: Complemental strand, 19159646 - 19159538
Alignment:
Q  626 attaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttatt 720  Q
    ||||||||||| ||||||||||||||||||||||| ||     |||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| || |    
T  19159646 attaaattcttaccactaatagtaagtattaattggaaaaaattaatattagaatttttgagcaataaagtaacacaattttcgagacataatttctact 19159547  T
Q  721 agtgaaatc 729  Q
    | |||||||    
T  19159546 aatgaaatc 19159538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 621 - 718
Target Start/End: Complemental strand, 36210478 - 36210373
Alignment:
Q  621 taagcattaaattcttgccactaatagtaagtattaattgaaa--------taatattagattttttgaacaataaattaacacaatttccgagacataa 712  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||        |||||||||| ||||||| ||||||| |||||||||||  |||||||||    
T  36210478 taagcattaaattcttgccaccaatggtaagttttaattgaaaaaaaaaattaatattagaatttttgagcaataaaataacacaatttttgagacataa 36210379  T
Q  713 ttttta 718  Q
    ||||||    
T  36210378 ttttta 36210373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 664 - 765
Target Start/End: Original strand, 6590626 - 6590729
Alignment:
Q  664 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatt 761  Q
    |||||||||| ||||| | |||||||||||||||||||| || ||||||||| |||||||| ||| |||||||| || | ||||| | ||||||||||||    
T  6590626 taatattagaattttttagcaataaattaacacaatttctgaaacataatttctattagtggaatccttaacatgtgtcataagggcacaagttaacatt 6590725  T
Q  762 tccc 765  Q
    ||||    
T  6590726 tccc 6590729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 676 - 743
Target Start/End: Complemental strand, 10500396 - 10500328
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccct 743  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||    
T  10500396 ttttgagcaataaagtaacacaatttccgatacataatttttattagtggaaatattaacatgtgccct 10500328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 676 - 766
Target Start/End: Complemental strand, 32227523 - 32227431
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    |||| |||||||||| |||||||||| | | ||||||||| ||||||| ||| |||||||||||||||||||| | || ||||||||||||||    
T  32227523 ttttaaacaataaatgaacacaattttcaatacataatttctattagtagaattcttaacatatgccctaagggcacatgttaacatttccct 32227431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 664 - 763
Target Start/End: Complemental strand, 32656344 - 32656243
Alignment:
Q  664 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaacatt 761  Q
    |||||||| || |||| | |||||||||||||||| || | | |||| |||| ||||||||||| ||||||||| |||||||||| | ||||||||||||    
T  32656344 taatattaaatattttaatcaataaattaacacaagtttcaatacatgatttctattagtgaaattcttaacatgtgccctaagggcacaagttaacatt 32656245  T
Q  762 tc 763  Q
    ||    
T  32656244 tc 32656243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 731
Target Start/End: Complemental strand, 28813511 - 28813423
Alignment:
Q  648 taagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatctt 731  Q
    ||||||||||||||||     |||||||| ||| ||| | ||||||||||||| ||||||||| ||||| ||||||||| |||||||||    
T  28813511 taagtattaattgaaaaaaattaatattaaattctttaagcaataaattaacataatttccgatacatattttttattaatgaaatctt 28813423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 676 - 738
Target Start/End: Original strand, 33830307 - 33830370
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatat 738  Q
    |||||| ||||||||||||||||||||| | ||||||||| ||||||| ||| |||||||||||    
T  33830307 ttttgagcaataaattaacacaatttccaatacataatttctattagtaaaattcttaacatat 33830370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 761
Target Start/End: Complemental strand, 35310282 - 35310195
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatt 761  Q
    |||||||||||||||||||| ||||||| |  ||||||||| |||| | ||| ||||| ||| |||||||||| | ||||||||||||    
T  35310282 ttttgaacaataaattaacataatttccaatgcataattttcattattggaattcttatcatgtgccctaagggcacaagttaacatt 35310195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 724
Target Start/End: Original strand, 8333439 - 8333520
Alignment:
Q  648 taagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtg 724  Q
    ||||||||||||||||     |||||||  ||||| ||||||||||||||||||||||| ||| |||  |||| ||||||||    
T  8333439 taagtattaattgaaaaaaattaatattgaattttctgaacaataaattaacacaattttcgatacaacatttctattagtg 8333520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 747
Target Start/End: Complemental strand, 12497352 - 12497287
Alignment:
Q  683 caataaattaacacaatttccgagacataatttttattag-tgaaatcttaacatatgccctaagg 747  Q
    ||||||||||||||||||||||| |||| |||| ||||||  ||| ||||||||| || |||||||    
T  12497352 caataaattaacacaatttccgacacatgatttctattagcggaattcttaacatgtgtcctaagg 12497287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 728
Target Start/End: Complemental strand, 45075734 - 45075689
Alignment:
Q  683 caataaattaacacaatttccgagacataatttttattagtgaaat 728  Q
    ||||||||||||||||||| | | ||||||||| ||||||||||||    
T  45075734 caataaattaacacaattttcaatacataatttatattagtgaaat 45075689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 7e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 124 - 264
Target Start/End: Complemental strand, 14748657 - 14748518
Alignment:
Q  124 gcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacagg 223  Q
    ||||||||||||| |||| ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||    
T  14748657 gcgatcgctgaagatgca-tttggcaaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattgcataagagttttgacagg 14748559  T
Q  224 aagtcgtga-aagaatttctacgataagttcatcaagaagga 264  Q
     |||||||| ||||||| | ||||||||||||||||| ||||    
T  14748558 gagtcgtgacaagaattcc-acgataagttcatcaaggagga 14748518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 613 - 766
Target Start/End: Complemental strand, 154343 - 154183
Alignment:
Q  613 acacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 707  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||||||     |||||||||||||||| | |||||||||||| ||||||| ||      
T  154343 acacatgttaaacattaaattcttgccactaatggtaagtattaattgaaaaaaattaatattagatttttttagcaataaattaacgcaatttctgaag 154244  T
Q  708 cataatttttattagtgaaat-cttaacatatgccct-aaggaccaagttaacatttccct 766  Q
    |||||||| |||||||| ||| |||||||| |||||| ||||  ||| |||||||||||||    
T  154243 cataatttctattagtggaatccttaacatgtgccctaaaggcgcaaattaacatttccct 154183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 614 - 701
Target Start/End: Complemental strand, 9464690 - 9464597
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaattt 701  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||||||||      |||||||| ||||||| |||| |||| |||||||||||    
T  9464690 cacatgttaagcattaaattattgccactaatggtaagtattaattgaaaaaaaattaatattaaattttttaaacattaaaataacacaattt 9464597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 665 - 747
Target Start/End: Original strand, 32785841 - 32785924
Alignment:
Q  665 aatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaagg 747  Q
    ||||||| || |||||| ||||||||||| | ||||||| | ||||||||| ||||||| ||| ||||||||| ||||||||||    
T  32785841 aatattaaatattttgagcaataaattaaaataatttccaatacataatttctattagtggaattcttaacatgtgccctaagg 32785924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 745
Target Start/End: Original strand, 33972611 - 33972748
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa--taa--tattagattttttgaacaataaattaacacaatttccgagaca 709  Q
    |||| |||||||||||| ||| | ||| |||| ||||| |||||||||||  |||  ||||| |  ||||||||||||||||||||  |||||| | |||    
T  33972611 cacatgttaagcattaatttcattccattaatggtaagaattaattgaaaaataaattattaaacattttgaacaataaattaacatcatttccaataca 33972710  T
Q  710 taattt-ttattagt-gaaatcttaacatatgccctaa 745  Q
    ||||||  ||||||| ||| ||||||||| ||||||||    
T  33972711 taatttcctattagtagaattcttaacatgtgccctaa 33972748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 614 - 693
Target Start/End: Original strand, 7269696 - 7269781
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaa 693  Q
    |||| ||||| ||||||||||||| || |||||||||||||||||| |||      |||||||| ||||||| | |||||||||||    
T  7269696 cacatgttaaacattaaattcttgtcagtaatagtaagtattaattaaaaaaaaactaatattaaattttttaagcaataaattaa 7269781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 3e-35; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 614 - 729
Target Start/End: Complemental strand, 51672869 - 51672749
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 708  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||| |||||||||||| |||||||||||||    
T  51672869 cacatgttaagcattaaattcttgccactaatggtaagtattaattgaaaaaaattaatattagattttttgagcaataaattaacgcaatttccgagac 51672770  T
Q  709 ataatttttattagtgaaatc 729  Q
    ||||||| |||||||| ||||    
T  51672769 ataatttctattagtggaatc 51672749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 619 - 765
Target Start/End: Complemental strand, 2614950 - 2614797
Alignment:
Q  619 gttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataat 713  Q
    ||||| ||||||||||||||||||||| |||| ||||| ||||||     |||||||| |||||||||  ||||||||||| |||||||  | |||||||    
T  2614950 gttaaacattaaattcttgccactaatggtaaatattatttgaaaaaaattaatattaaattttttgagaaataaattaacgcaatttcaaaaacataat 2614851  T
Q  714 ttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccc 765  Q
    |||||||| || ||| ||||||||||||||||||||| ||||||||||||||||    
T  2614850 ttttattaatggaatccttaacatatgccctaaggacacaagttaacatttccc 2614797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 614 - 762
Target Start/End: Original strand, 7648692 - 7648847
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 708  Q
    |||| |||||||||||| || |||||||||||||||||||||||||||||     |||| ||||||||||| |||||||||||||| ||||||| || ||    
T  7648692 cacatgttaagcattaactttttgccactaatagtaagtattaattgaaaaaaattaattttagattttttaaacaataaattaacgcaatttctgaaac 7648791  T
Q  709 ataatttttattagtgaaat-cttaacatatgccctaag-gaccaagttaacattt 762  Q
    ||||||| |||||||| ||| |||||||||| | ||||| |  |||||||||||||    
T  7648792 ataatttatattagtggaatccttaacatatactctaagagcacaagttaacattt 7648847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 620 - 742
Target Start/End: Original strand, 13132130 - 13132258
Alignment:
Q  620 ttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatt 714  Q
    |||||||||||||| || ||||||||  ||||||||||||||||     |||||||||||||||||  |||||||||||| |||||||||| ||||||||    
T  13132130 ttaagcattaaattattaccactaatgataagtattaattgaaaaaaattaatattagattttttgggcaataaattaacgcaatttccgaaacataatt 13132229  T
Q  715 tttattagtgaaat-cttaacatatgccc 742  Q
    | |||||||| ||| |||||||| |||||    
T  13132230 tctattagtggaatccttaacatgtgccc 13132258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 676 - 766
Target Start/End: Original strand, 3491499 - 3491591
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccct 766  Q
    |||||| |||||||||| |||||||||| | ||||||||| |||||||| ||| |||||||| |||||||||| | |||||||||||||||||    
T  3491499 ttttgagcaataaattatcacaatttccaatacataatttctattagtggaattcttaacatttgccctaagggcacaagttaacatttccct 3491591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 661 - 737
Target Start/End: Complemental strand, 49872268 - 49872191
Alignment:
Q  661 aaataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacata 737  Q
    ||||||||||| ||||||||| ||||||||||||||||||| ||| |||  ||||||||||||| ||| |||||||||    
T  49872268 aaataatattaaattttttgagcaataaattaacacaattttcgatacaacatttttattagtggaatccttaacata 49872191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 683 - 766
Target Start/End: Original strand, 8550386 - 8550471
Alignment:
Q  683 caataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    ||||||||||||||||||||| | ||||||||| ||||||| ||| |||||||||||| | || || | |||||||||||||||||    
T  8550386 caataaattaacacaatttccaatacataatttctattagtggaattcttaacatatgtcatacgggcacaagttaacatttccct 8550471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 676 - 765
Target Start/End: Original strand, 13352310 - 13352402
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttatta--gtgaaatcttaacatatgccctaaggac-caagttaacatttccc 765  Q
    |||||||||||||||||||||||||| | |  ||||||||||||||  | ||||| |||| || |||||||||| | ||||||||||||||||    
T  13352310 ttttgaacaataaattaacacaattttcaatgcataatttttattaatgggaaattttaaaatgtgccctaagggcacaagttaacatttccc 13352402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 684 - 766
Target Start/End: Complemental strand, 298279 - 298195
Alignment:
Q  684 aataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    |||||||||||||||||||| | ||| ||||  ||||||| ||| ||||||||| |||||||||| | |||||||||||||||||    
T  298279 aataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccctaagggcacaagttaacatttccct 298195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 664 - 731
Target Start/End: Complemental strand, 27211402 - 27211335
Alignment:
Q  664 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatctt 731  Q
    |||||||| | ||||| ||||||||||||||| ||||| ||| ||||||||| |||||||| ||||||    
T  27211402 taatattaaaatttttaaacaataaattaacataattttcgatacataatttctattagtggaatctt 27211335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 619 - 762
Target Start/End: Complemental strand, 50746167 - 50746016
Alignment:
Q  619 gttaagcattaaatt-cttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataa 712  Q
    ||||| ||||||||| |||| || || | |||||||||||||||||     ||||| || |||||||||| |||||||||| | ||||| ||| |||  |    
T  50746167 gttaaacattaaatttcttgtcattagtggtaagtattaattgaaaaaaattaatagtaaattttttgaataataaattaatataattttcgatacaata 50746068  T
Q  713 tttttattagtgaaat-cttaacatatgccctaaggac-caagttaacattt 762  Q
    ||| |||||||| ||| |||||||| |||| ||||||| |||||||||||||    
T  50746067 tttatattagtggaatccttaacatgtgccttaaggacacaagttaacattt 50746016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 619 - 766
Target Start/End: Original strand, 52141501 - 52141655
Alignment:
Q  619 gttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaatttccgagacataa 712  Q
    |||||||||||| ||| | |||||||| ||||||||| | |||||      |||||||| |  |||||||||||||||||||| ||||||| |  |||||    
T  52141501 gttaagcattaatttcattccactaatggtaagtatttaatgaaaaaaaattaatattaaacattttgaacaataaattaacataatttccaatgcataa 52141600  T
Q  713 tttttattagt-gaaatcttaacatatgccctaaggaccaagttaacatttccct 766  Q
    |||| |||| | ||| ||||| ||| |||| ||||   |||||||||||||||||    
T  52141601 ttttcattattggaattcttatcatgtgccttaagacacaagttaacatttccct 52141655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 632 - 731
Target Start/End: Original strand, 2692406 - 2692511
Alignment:
Q  632 ttcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaa-caataaattaacacaatttccgagacataatttttattagtga 725  Q
    |||||||||||||| |||| |||||| ||||      |||||||| ||||||| || | ||||||||||||||||| ||| | | |||||||||||||||    
T  2692406 ttcttgccactaatggtaaatattaaatgaataaaattaatattaaatttttttaagcgataaattaacacaattttcgatataaaatttttattagtga 2692505  T
Q  726 aatctt 731  Q
    ||||||    
T  2692506 aatctt 2692511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 736
Target Start/End: Complemental strand, 5198881 - 5198820
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacat 736  Q
    ||||||| |||||||||||||||||||| | ||||||||| ||||||| ||| |||||||||    
T  5198881 ttttgaataataaattaacacaatttccaatacataatttctattagtagaattcttaacat 5198820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 762
Target Start/End: Original strand, 21276636 - 21276715
Alignment:
Q  685 ataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacattt 762  Q
    ||||||||||||||||| | | ||||||||| ||||||| ||| ||||| ||| |||||||||||| |||||||| ||||    
T  21276636 ataaattaacacaattttcaatacataatttctattagtggaattcttatcatgtgccctaaggacacaagttaatattt 21276715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 43986909 - 43986972
Alignment:
Q  165 gagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtc 228  Q
    |||||||||||||||||||||||||| |  ||||||||||| | ||| | |||||| |||||||    
T  43986909 gagattagggttttccatgatttgcaaatgcatttgaattgaagcagggatttcaccggaagtc 43986972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 43907725 - 43907684
Alignment:
Q  164 agagattagggttttccatgatttgcagacacatttgaattg 205  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||    
T  43907725 agagattagggttttccatgatttgcaaacacacttgtattg 43907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 721
Target Start/End: Original strand, 48722765 - 48722810
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttatta 721  Q
    |||||| ||||| ||||||||||||||| | |||||||||||||||    
T  48722765 ttttgagcaatacattaacacaatttccaatacataatttttatta 48722810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 603 - 765
Target Start/End: Original strand, 3344873 - 3345042
Alignment:
Q  603 tgcccttggaacacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacaca 697  Q
    ||||||| || |||| ||||| ||||||||| ||||||||||| |||||||||||||||||     |||||||||||||||| | |||||||||||| ||    
T  3344873 tgcccttagagcacatgttaaacattaaatttttgccactaatggtaagtattaattgaaataaattaatattagattttttaagcaataaattaacgca 3344972  T
Q  698 atttccgagacataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccc 765  Q
    |||||  | ||||||||| ||||| |||||| |||||||| |||||||||||| ||||||||||||||||    
T  3344973 atttctaaaacataatttctattaatgaaatccttaacatgtgccctaaggacgcaagttaacatttccc 3345042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 614 - 745
Target Start/End: Complemental strand, 2903506 - 2903368
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaatttccgaga 707  Q
    |||| ||||| || |||||||||| || ||||||||||||||||| ||||      |||||||||| ||||||| ||||||||||||| |||||||||||    
T  2903506 cacacgttaaacactaaattcttgtcattaatagtaagtattaatagaaaaaaaattaatattagaatttttgagcaataaattaacataatttccgaga 2903407  T
Q  708 cataatttttattagt-gaaatcttaacatatgccctaa 745  Q
    |||||||| ||||||| ||| ||||||||| ||||||||    
T  2903406 cataatttctattagtagaattcttaacatgtgccctaa 2903368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 613 - 729
Target Start/End: Original strand, 42655922 - 42656043
Alignment:
Q  613 acacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 707  Q
    ||||| ||||| ||||||||||||| ||||||| |||||||||||||||||     |||||||||||||||||| |||||||||||  |||||| |||||    
T  42655922 acacatgttaaacattaaattcttgacactaatggtaagtattaattgaaaaaaattaatattagattttttgagcaataaattaatgcaattttcgaga 42656021  T
Q  708 cataatttttattagtgaaatc 729  Q
    |||||||| || |||| |||||    
T  42656022 cataatttctactagtaaaatc 42656043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 613 - 761
Target Start/End: Original strand, 25037262 - 25037417
Alignment:
Q  613 acacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 707  Q
    ||||| ||||| ||||||||||||||||||||| |||||| ||||||||||     |||||||||||||||||| |||||||||||| |||||| ||| |    
T  25037262 acacatgttaaacattaaattcttgccactaatggtaagttttaattgaaaaaaattaatattagattttttgagcaataaattaacgcaattttcgaaa 25037361  T
Q  708 cataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatt 761  Q
     ||||||| ||| ||| |||  ||||| ||||| ||||| ||| ||||||||||||    
T  25037362 tataatttctatcagtagaatccttaatatatgtcctaatgacacaagttaacatt 25037417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 619 - 746
Target Start/End: Complemental strand, 32135956 - 32135824
Alignment:
Q  619 gttaagcattaaattcttgccactaatagtaagtattaattgaaa----taatattagattttttgaacaataaattaacacaatttccgagacataatt 714  Q
    ||||| ||||||||||||| |||||||   || ||||||||||||    |||||||||||||||||| |||||||||| | |||||| ||||||||||||    
T  32135956 gttaaacattaaattcttgtcactaatgaaaaatattaattgaaaaaattaatattagattttttgagcaataaattatcgcaatttacgagacataatt 32135857  T
Q  715 tttattagtgaaat-cttaacatatgccctaag 746  Q
    | |||||||| ||| |||||||| |||||||||    
T  32135856 tctattagtggaatccttaacatgtgccctaag 32135824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 614 - 712
Target Start/End: Complemental strand, 28085323 - 28085220
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 708  Q
    |||| ||||||||||||||| |||||| |||| |||| ||||||||||||     |||||||| ||||||| | |||||||||||| ||||||| |||||    
T  28085323 cacatgttaagcattaaatttttgccattaatggtaaatattaattgaaaaaaattaatattaaattttttaagcaataaattaacgcaatttctgagac 28085224  T
Q  709 ataa 712  Q
    ||||    
T  28085223 ataa 28085220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 620 - 713
Target Start/End: Original strand, 13789633 - 13789731
Alignment:
Q  620 ttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataat 713  Q
    ||||||||| |||||||||||| |||  ||||||||||||||||     |||||||| |||| |||| |||||||||||||||||||| || |||||||    
T  13789633 ttaagcatttaattcttgccacaaatgataagtattaattgaaaaaatttaatattaaatttattgagcaataaattaacacaatttctgatacataat 13789731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 623 - 723
Target Start/End: Complemental strand, 10333930 - 10333823
Alignment:
Q  623 agcattaaattcttgccactaatagtaagtattaattgaaa-------taatattagattttttgaacaataaattaacacaatttccgagacataattt 715  Q
    ||||||||||||||  || |||| |||||||||||||||||       |||||||| ||||||||| |||||||||||  || ||| | |||||||||||    
T  10333930 agcattaaattcttatcattaatggtaagtattaattgaaaaaaaaattaatattaaattttttgagcaataaattaatgcatttttcaagacataattt 10333831  T
Q  716 ttattagt 723  Q
    ||||||||    
T  10333830 ttattagt 10333823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 728
Target Start/End: Complemental strand, 39796096 - 39796032
Alignment:
Q  664 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat 728  Q
    |||||||| ||||||| | |||||||||||| |||||| ||| ||||||||| ||||||||||||    
T  39796096 taatattaaatttttttagcaataaattaacgcaattttcgatacataatttgtattagtgaaat 39796032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 614 - 766
Target Start/End: Original strand, 17268796 - 17268954
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa----taatattagattttttgaacaataaattaacacaatttccgagaca 709  Q
    |||| |||||||||| |||| ||||||||||| | |||||||||||||||    |||||||||||||||| ||||||||||||||||||| |||||||||    
T  17268796 cacatgttaagcattcaattattgccactaatggcaagtattaattgaaaaaattaatattagattttttaaacaataaattaacacaatctccgagaca 17268895  T
Q  710 taatttttattagt-gaaatcttaacatatgccct-aaggaccaagttaacatttccct 766  Q
    |||||| ||||| | ||| ||||||||| |||||| ||||  |||||||||||||||||    
T  17268896 taatttctattaatagaattcttaacatgtgccctaaaggttcaagttaacatttccct 17268954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 614 - 762
Target Start/End: Original strand, 52278991 - 52279146
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaataa------tattagattttttgaacaataaattaacacaatttccgaga 707  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||      ||||||||||||||| ||||||||||||||||||||  | |    
T  52278991 cacatgttaagcattaaatttttgccactaatggtaagtattaattgaaaaaaaaatagtattagattttttgagcaataaattaacacaatttcttaaa 52279090  T
Q  708 cataatttttattagtgaaatc-ttaacatatgccctaaggaccaagttaacattt 762  Q
    |||||||| ||||||||||||| ||||| | ||||| ||||  || ||||||||||    
T  52279091 cataatttctattagtgaaatcattaacttgtgcccaaaggcacacgttaacattt 52279146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 667 - 765
Target Start/End: Original strand, 26889935 - 26890035
Alignment:
Q  667 tattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttcc 764  Q
    ||||||||||||||| |||| ||||||| |||||| ||||||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  26889935 tattagattttttgagcaattaattaacgcaattttcgagacataatttctattagtgaaatccttaacatgtgccctaaggacacaagttaacatttcc 26890034  T
Q  765 c 765  Q
    |    
T  26890035 c 26890035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 676 - 766
Target Start/End: Complemental strand, 10109307 - 10109215
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    |||||| ||||||||||||||||||| | | ||||||||| ||||||| ||| |||||| || |||||||||||| |||||||||||||||||    
T  10109307 ttttgagcaataaattaacacaattttcaatacataatttctattagtggaattcttaatatgtgccctaaggacacaagttaacatttccct 10109215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 619 - 721
Target Start/End: Original strand, 11348010 - 11348118
Alignment:
Q  619 gttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccga-gacataa 712  Q
    ||||| |||||||||||||||| |||  |||||||||||||||||     |||||||||||||||| | |||||||||||| ||||||||||  ||||||    
T  11348010 gttaaacattaaattcttgccattaacggtaagtattaattgaaaaaaattaatattagattttttaagcaataaattaacgcaatttccgataacataa 11348109  T
Q  713 tttttatta 721  Q
    ||| |||||    
T  11348110 tttctatta 11348118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 635 - 762
Target Start/End: Original strand, 32055045 - 32055179
Alignment:
Q  635 ttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatc 729  Q
    ||||||||| |||||| |||||| |||||     |||||||| ||||||| ||||||||||||||||||||| ||| ||||||||| ||||| || ||||    
T  32055045 ttgccactagtagtaaatattaaatgaaaaaaattaatattatattttttaaacaataaattaacacaattttcgatacataatttctattaatggaatc 32055144  T
Q  730 -ttaacatatgccctaaggac-caagttaacattt 762  Q
     ||||||| |||  ||||| | |||||||||||||    
T  32055145 tttaacatgtgctttaagggcacaagttaacattt 32055179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 683 - 766
Target Start/End: Original strand, 22409423 - 22409508
Alignment:
Q  683 caataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    ||||||||||||||||||||| | |||| |||| ||||||| ||| ||||||||| |||||||||| | |||||||||||||||||    
T  22409423 caataaattaacacaatttccaatacatgatttctattagtagaattcttaacatgtgccctaagggcacaagttaacatttccct 22409508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 764
Target Start/End: Original strand, 26533186 - 26533267
Alignment:
Q  685 ataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttcc 764  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||| |||| ||||| | |||||||||||||||    
T  26533186 ataaattaacacaatttccgatacataatttctattagtggaattcttaacatgtgccataagggcacaagttaacatttcc 26533267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 664 - 766
Target Start/End: Complemental strand, 51675973 - 51675870
Alignment:
Q  664 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccct-aaggaccaagttaacatt 761  Q
    |||||||| ||||||| |||||||||||||| |||||||||||||||||| | ||||||| |||| ||||| ||||| | | ||||  ||||||||||||    
T  51675973 taatattaaatttttt-aacaataaattaacgcaatttccgagacataatatctattagtaaaatccttaaaatatgtcataaaggcacaagttaacatt 51675875  T
Q  762 tccct 766  Q
    |||||    
T  51675874 tccct 51675870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 676 - 766
Target Start/End: Complemental strand, 32318603 - 32318512
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    |||||||||||||||||||||||||| | | ||||||||| ||||| ||||| ||||||||| ||  |||||| | |||||||||||||||||    
T  32318603 ttttgaacaataaattaacacaattttcaatacataatttctattaatgaaattcttaacatgtg-gctaagggcacaagttaacatttccct 32318512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 663
Target Start/End: Original strand, 26889583 - 26889632
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa 663  Q
    |||| |||||||||||||||||||| |||||| |||||| ||||||||||    
T  26889583 cacatgttaagcattaaattcttgctactaatggtaagtgttaattgaaa 26889632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 677 - 763
Target Start/End: Original strand, 4960442 - 4960534
Alignment:
Q  677 tttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-----tcttaacatatgccctaaggac-caagttaacatttc 763  Q
    ||||| ||||||||||||||||||| | | || |||||| |||||||| ||     ||||||||| |||||||||||| ||||||||||||||    
T  4960442 tttgagcaataaattaacacaattttcaatacgtaatttctattagtggaattcattcttaacatgtgccctaaggacacaagttaacatttc 4960534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 661 - 765
Target Start/End: Original strand, 14136633 - 14136739
Alignment:
Q  661 aaataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaac 758  Q
    ||||||||||| || | |||| ||||||||||| | ||||||| | |||| |||| ||||||| ||| ||||||||||| || ||||| | ||||||| |    
T  14136633 aaataatattaaatatgttgagcaataaattaatataatttccaatacatgatttctattagtagaattcttaacatataccttaagggcacaagttagc 14136732  T
Q  759 atttccc 765  Q
    |||||||    
T  14136733 atttccc 14136739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 684 - 749
Target Start/End: Original strand, 20574954 - 20575020
Alignment:
Q  684 aataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac 749  Q
    |||||||||||||||||||| | ||| |||| |||||| | ||| ||||||||| ||||||||||||    
T  20574954 aataaattaacacaatttccaatacacaattattattaatggaattcttaacatgtgccctaaggac 20575020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 736
Target Start/End: Original strand, 24010275 - 24010336
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacat 736  Q
    ||||| |||||||||||||||||||| | | ||||||||| ||||||| ||| |||||||||    
T  24010275 ttttggacaataaattaacacaattttcaatacataatttctattagtggaattcttaacat 24010336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 3e-32; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 614 - 766
Target Start/End: Complemental strand, 17867597 - 17867438
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 708  Q
    |||||||||||||||||||||||| || |||| |||||||||||||||||     |||||||| ||||||| |  |||||||||||||||||||||| ||    
T  17867597 cacaggttaagcattaaattcttgtcattaatggtaagtattaattgaaaaaaaataatattaaattttttaagtaataaattaacacaatttccgatac 17867498  T
Q  709 ataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    ||||||| ||||| ||||| ||||||||| |||| ||||||| ||| |||||||||||||    
T  17867497 ataatttctattaatgaaattcttaacatgtgccttaaggacacaaattaacatttccct 17867438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 599 - 723
Target Start/End: Complemental strand, 24991898 - 24991769
Alignment:
Q  599 attatgcccttggaacacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaa 693  Q
    ||||||||||| |  |||| ||||| |||||||||||||||| ||||||||||||||||||||||     |||||||| |||||||||||||||||||||    
T  24991898 attatgcccttagggcacatgttaaacattaaattcttgccattaatagtaagtattaattgaaaaaaattaatattaaattttttgaacaataaattaa 24991799  T
Q  694 cacaatttccgagacataatttttattagt 723  Q
    | || ||||||||||||||||| |||||||    
T  24991798 cgcagtttccgagacataatttctattagt 24991769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 667 - 766
Target Start/End: Complemental strand, 2539931 - 2539831
Alignment:
Q  667 tattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatcttaacatatgccctaaggac-caagttaacatttccc 765  Q
    ||||||||||||||| |||||||||||  |||||| ||||||||||||| ||||| | |||||||||||| |||| ||||| | ||||||||||||||||    
T  2539931 tattagattttttgagcaataaattaatgcaattttcgagacataatttctattaataaaatcttaacatgtgccataagggcacaagttaacatttccc 2539832  T
Q  766 t 766  Q
    |    
T  2539831 t 2539831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 664 - 721
Target Start/End: Complemental strand, 31451364 - 31451307
Alignment:
Q  664 taatattagattttttgaacaataaattaacacaatttccgagacataatttttatta 721  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||    
T  31451364 taatattagattttttgaacaataaattaacaaaatttccaagacataatttctatta 31451307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 625 - 721
Target Start/End: Complemental strand, 38730316 - 38730215
Alignment:
Q  625 cattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttat 719  Q
    ||||||||||||| || |||| |||||||||||||||||     |||||||| |||||||||||||||||||||| |||||| ||| | ||||||| |||    
T  38730316 cattaaattcttgtcattaatggtaagtattaattgaaaaaaattaatattaaattttttgaacaataaattaacgcaattttcgacatataatttctat 38730217  T
Q  720 ta 721  Q
    ||    
T  38730216 ta 38730215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 614 - 715
Target Start/End: Complemental strand, 40037614 - 40037507
Alignment:
Q  614 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-------taatattagattttttgaacaataaattaacacaatttccgag 706  Q
    |||| |||||||||||||||||||||| ||||  ||||||||||||||||       |||||||||||||||||| ||| |||||||| || |||| |||    
T  40037614 cacatgttaagcattaaattcttgccattaatgataagtattaattgaaaaaaaaattaatattagattttttgagcaa-aaattaactcagtttctgag 40037516  T
Q  707 acataattt 715  Q
    |||||||||    
T  40037515 acataattt 40037507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 663
Target Start/End: Complemental strand, 2540275 - 2540217
Alignment:
Q  605 cccttggaacacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa 663  Q
    ||||| ||||||| ||||||||||||||||||| || |||| |||||||||||||||||    
T  2540275 cccttagaacacatgttaagcattaaattcttgtcagtaatggtaagtattaattgaaa 2540217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 42693706 - 42693665
Alignment:
Q  164 agagattagggttttccatgatttgcagacacatttgaattg 205  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  42693706 agagattagagttttccatgatttgcagacacatttgaattg 42693665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 625 - 702
Target Start/End: Complemental strand, 3447511 - 3447429
Alignment:
Q  625 cattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttc 702  Q
    ||||||||||||| || ||||  ||| ||||||||||||     |||||||||||||||||| ||||||||||||| ||||||    
T  3447511 cattaaattcttgtcattaatgataaatattaattgaaaaaaattaatattagattttttgagcaataaattaacataatttc 3447429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 683 - 763
Target Start/End: Complemental strand, 11257936 - 11257854
Alignment:
Q  683 caataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttc 763  Q
    |||||||||||||||||||   | ||||||||| ||||||| ||| ||||||||| |||||||||| | ||||||||||||||    
T  11257936 caataaattaacacaatttataatacataatttctattagtggaattcttaacatgtgccctaagggcacaagttaacatttc 11257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 764
Target Start/End: Original strand, 37456109 - 37456191
Alignment:
Q  684 aataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttcc 764  Q
    |||||||||||||||||||| | ||||||||| ||||||| ||| ||||||||  |||||||||| | ||||||| |||||||    
T  37456109 aataaattaacacaatttccaatacataatttctattagtggaattcttaacacgtgccctaagggcacaagttagcatttcc 37456191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 763
Target Start/End: Complemental strand, 41128226 - 41128125
Alignment:
Q  664 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatt 761  Q
    |||||||| || |||||| ||||||||||||| ||||| | | ||||||||| ||||||| ||| |||||| || |||||| ||| | ||||||||||||    
T  41128226 taatattaaatattttgagcaataaattaacataattttcaatacataatttatattagtggaattcttaatatgtgcccttagggcgcaagttaacatt 41128127  T
Q  762 tc 763  Q
    ||    
T  41128126 tc 41128125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 747
Target Start/End: Original strand, 7107518 - 7107590
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaagg 747  Q
    |||||| ||||||||| ||||||||||| | ||||||||| ||||||| ||| ||||||||| |||| |||||    
T  7107518 ttttgagcaataaatttacacaatttccaatacataatttctattagtggaattcttaacatgtgccataagg 7107590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 743
Target Start/End: Original strand, 8072526 - 8072594
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccct 743  Q
    |||||||| ||||||||||||||||| | | ||||||||| ||||||| ||| ||||||||| ||||||    
T  8072526 ttttgaaccataaattaacacaattttcaatacataatttctattagtggaattcttaacatgtgccct 8072594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 766
Target Start/End: Original strand, 30069797 - 30069881
Alignment:
Q  684 aataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 766  Q
    |||||||||||||||||||| | ||| ||||  ||||||| ||| ||||||||| |||| ||||| | |||||||||||||||||    
T  30069797 aataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccttaagggcacaagttaacatttccct 30069881  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 728
Target Start/End: Original strand, 1042800 - 1042845
Alignment:
Q  683 caataaattaacacaatttccgagacataatttttattagtgaaat 728  Q
    ||||||||||||||||||| | | ||||||||| ||||||||||||    
T  1042800 caataaattaacacaattttcaatacataatttctattagtgaaat 1042845  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 736
Target Start/End: Complemental strand, 16037368 - 16037307
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacat 736  Q
    |||||| ||||||||||| ||||||||||| ||||||||| ||| ||| ||| |||||||||    
T  16037368 ttttgaccaataaattaatacaatttccgatacataatttctatcagtggaattcttaacat 16037307  T

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Target: scaffold0154 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 664 - 766
Target Start/End: Original strand, 36407 - 36511
Alignment:
Q  664 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatt 761  Q
    |||||||| || ||||||  |||||||||||||||||||| | ||||||||| ||||||| ||| ||||||||| |||  ||||| | ||||||||||||    
T  36407 taatattaaatattttgagaaataaattaacacaatttccaatacataatttctattagtggaattcttaacatgtgctttaagggcacaagttaacatt 36506  T
Q  762 tccct 766  Q
    |||||    
T  36507 tccct 36511  T

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Target: scaffold0524 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 721
Target Start/End: Original strand, 1494 - 1539
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttatta 721  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||    
T  1494 ttttgagcaataaattaacacaatttccgatacataatttctatta 1539  T

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Target: scaffold0102 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 762
Target Start/End: Complemental strand, 21321 - 21233
Alignment:
Q  676 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccct-aaggaccaagttaacattt 762  Q
    ||||||| |||||||||||||||||||| | | ||||||||||||| | ||| ||||||||| || ||| ||||  |||||||||||||    
T  21321 ttttgaataataaattaacacaatttccaatatataatttttattattggaattcttaacatgtgtcctaaaggcacaagttaacattt 21233  T

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