View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6880_high_10 (Length: 291)
Name: NF6880_high_10
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6880_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 31796458 - 31796200
Alignment:
| Q |
18 |
taaaattatttc-caccgtcaatacataaacattaaaataaattataaaataatctaaataaggattttatcatttcattatgatattagcatgtgtggg |
116 |
Q |
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| T |
31796458 |
taaaattatttcacaccgtcaatacataaacattaaaataaattataaaataatctaaataaggattgtatcatttcattatgtgattagcatgtgtggg |
31796359 |
T |
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| Q |
117 |
agcttttatcatggtccagacaagttatatatgggttcaattaaccacacaaaaatatgttaaagaatctcacatccttcgagtaaagattggtaaaaga |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||| |
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| T |
31796358 |
agcttttatcatggtccagaaaagttatatatgggttcaattaaccacgcaaaaatatgttaaagaatctcacatcattcaagtaaagattcgtaaaaga |
31796259 |
T |
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| Q |
217 |
gactcatattcatggtgttctatcgttaaaggagcttacattcttagttcgggattcat |
275 |
Q |
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| T |
31796258 |
ggctcatattcatgatgttccatcgttaaagcagcttacattcttagttcgggattcat |
31796200 |
T |
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