View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6880_high_2 (Length: 666)

Name: NF6880_high_2
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6880_high_2
NF6880_high_2
[»] chr1 (1 HSPs)
chr1 (17-659)||(39494659-39495301)


Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 659
Target Start/End: Original strand, 39494659 - 39495301
Alignment:
Q  17 agaatgaaggtcagtaatatgaatcttccaattccatggacaatttcaaatatagagggctttttcgtgtgaagattttcacaaaattggttgggtagac 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39494659 agaatgaaggttagtaatatgaatcttccaattccatggacaatttcaaatatagagggctttttcgtgtgaagattttcacaaaattggttgggtagac 39494758  T
Q  117 acttcgcaccacaatatagttgaaaaagtctgtgatgttgacttgagatctttggtttgaattgtgctcatctttaaagttttaaattcgattctttcga 216  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| |||||| | ||| ||||||||| |||||||||||||||||    
T  39494759 acttcgcaccacaatatagttgaaaaagtctgtggtgttgacttgagacctttgatttggattgtgtttatccttaaagtttcaaattcgattctttcga 39494858  T
Q  217 tatcaatttaggtaaatcaatttatcttaaaaaatatagttgaaaatgtacctctaccttgacatcaattgcctaatagcatcttataagcaaatctcat 316  Q
    ||||||||| | |||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39494859 tatcaatttggataaaccgatttatcttaaaaaatatagctgaaaatgtacctctacctcgacatcaattgcctaatagcatcttataagcaaatctcat 39494958  T
Q  317 taaagaaaagttaaatatcctttcaaaaatagtagggtcgtatatattctttaatttcacctgtactgttgctatatatgttggctccaaggtccaccaa 416  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39494959 taaagaaaagttaaatatcctttcgaaaatagtagggtcgtatatattcttttatttcacctgtactgttgctatatatgttggctccaaggtccaccaa 39495058  T
Q  417 tgagccattctgatatgacctaattcttctccatttgcttttcatgttgatgttgtaaaatactaatgcacgtcactttatgtagtggcgaataaagaat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39495059 tgagccattctgatatgacctaattcttctccatttgcttttcatgttgatgttgtaaaatactaatgcacgtcactttatgtagtggcgaataaagaat 39495158  T
Q  517 atttttaaaaatattaggtcagagtttttgatgccctgtaacagnnnnnnnntagtttcttgacctaaacaaatatagaaaagttgaattaattaattga 616  Q
    |||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  39495159 atttttaaaaatattaggtcagaggttttgatgccctgtaacagaaaaaaaatagtttcttgacctaaacaaaaatagaaaagtcgaattaattaattga 39495258  T
Q  617 agacatatgaatctcagagtcaactacatttgtgatgtccatc 659  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  39495259 agacatatgaatctcagagtcaactacatttgtggtgtacatc 39495301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University