View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6880_low_11 (Length: 311)
Name: NF6880_low_11
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6880_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 11325781 - 11325481
Alignment:
| Q |
1 |
ttatctcagtctttttccgatgacacaggaagtgttttgtccnnnnnnn-attcattcagtgagtcttatgcaagtaaactcttgttttcttctacacaa |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325781 |
ttatctcagtctttttccgatgacacaggaagtgttttgtccttttttttattcattcagtgagtcttatgcaagtaaactcttgttttcttctacacaa |
11325682 |
T |
|
| Q |
100 |
ttttcacatgataatgtacttt-gatgtggattttggatgaaaatttgaaaaataatttaaatagaaaaggtactttttatgcttttgttcttacttttg |
198 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325681 |
ttttcacatgataatgtatttttgatgtggattttggatgaaaatttgaaaaataatttaaatagaaaaggtactttttatgcttttgttcttacttttg |
11325582 |
T |
|
| Q |
199 |
gaacatgttctgattttctaattcatattagacttctgaaatggtttccactgatttttacatgtcattccttgatattgtgctctttttcatatgatgt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325581 |
gaacatgttctgattttctaattcatattagacttctgaaatggtttccactgctttttacatgtcattccttgatattgtgctctttttcatatgatgt |
11325482 |
T |
|
| Q |
299 |
c |
299 |
Q |
| |
|
| |
|
|
| T |
11325481 |
c |
11325481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 11483802 - 11483502
Alignment:
| Q |
1 |
ttatctcagtctttttccgatgacacaggaagtgttttgtccnnnnnnn-attcattcagtgagtcttatgcaagtaaactcttgttttcttctacacaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11483802 |
ttatctcagtctttttccgatgacacaggaagtgttttgtccttttttttattcattcagtgagtcttatgcaagtaaactcttgttttcttctacacaa |
11483703 |
T |
|
| Q |
100 |
ttttcacatgataatgtacttt-gatgtggattttggatgaaaatttgaaaaataatttaaatagaaaaggtactttttatgcttttgttcttacttttg |
198 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11483702 |
ttttcacatgataatgtatttttgatgtggattttggatgaaaatttgaaaaataatttaaatagaaaaggtactttttatgcttttgttcttacttttg |
11483603 |
T |
|
| Q |
199 |
gaacatgttctgattttctaattcatattagacttctgaaatggtttccactgatttttacatgtcattccttgatattgtgctctttttcatatgatgt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483602 |
gaacatgttctgattttctaattcatattagacttctgaaatggtttccactgctttttacatgtcattccttgatattgtgctctttttcatatgatgt |
11483503 |
T |
|
| Q |
299 |
c |
299 |
Q |
| |
|
| |
|
|
| T |
11483502 |
c |
11483502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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