View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6880_low_12 (Length: 305)
Name: NF6880_low_12
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6880_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 110 - 297
Target Start/End: Original strand, 22042541 - 22042728
Alignment:
| Q |
110 |
ctgatgttgaaatgtttgatactgaatgatgtcttgccatctggtaatgtatttatgtcttcaaaaacactaaacaagtgtttgtgttcatactcctagc |
209 |
Q |
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| T |
22042541 |
ctgatgttgaaatgtttgattctgaatgatgtcttgccatctgctaatgtatttatatcttcaaaaacactaaagaagtgtttgtgttcatgctcctagc |
22042640 |
T |
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| Q |
210 |
ttactagaactcttggagagcattacttaaagggaagagatcaagaatatggctgagatggtatcgttataaccaaaatgagtataat |
297 |
Q |
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| T |
22042641 |
ttactagaactcttggagagcattacttaaagggaagagatcaagaatatggctgagatggtatcgttataaccgaaatgagtataat |
22042728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 22042033 - 22042126
Alignment:
| Q |
18 |
gtatgaacctgtcaaaacagaaaacacgtgatatcattgtgaatttgttcacggtgccaaaaattgacgcaccagtctcgttttcaattctact |
111 |
Q |
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| T |
22042033 |
gtatgaacctgtcaaaatagaaaacacagggtatcgttgtgaaattgttcacggtgccaaaaattgacgcaccagtctcatttacaattttact |
22042126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 22016574 - 22016482
Alignment:
| Q |
110 |
ctgatgttgaaatgtttgatactgaatgatgtcttgccatctggtaatgtatttatgtcttcaaaaacactaaacaagtgtttgtgttcatac |
202 |
Q |
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| T |
22016574 |
ctgatgttgaaatggttgcttcagaatgatgtcttggcatctactaataaatttatatcttcaaaaacactaaagaagcatttgtgttcatac |
22016482 |
T |
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