View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6880_low_15 (Length: 264)
Name: NF6880_low_15
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6880_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 114 - 255
Target Start/End: Complemental strand, 15002200 - 15002059
Alignment:
| Q |
114 |
cttgaaggaagcttgagaaaggttaatacatgaatgtcaaagctagaacagaggtgtagagacaaaatttcgtttatttagaaggggttaggagaatgga |
213 |
Q |
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| T |
15002200 |
cttggaggaagcttgagaaaggttaatacatgaatgtcaaagctagaacagaggtgtagagacaaaatttcgttcatttagaagggattaggagaatgga |
15002101 |
T |
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| Q |
214 |
ggtgttgctgtactttctgcataatgggtgttgtttcttcat |
255 |
Q |
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| T |
15002100 |
ggtgttgctgtactttctgcataatgggtgttgtttcttcat |
15002059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 112 - 255
Target Start/End: Original strand, 9821353 - 9821496
Alignment:
| Q |
112 |
aacttgaaggaagcttgagaaaggttaatacatgaatgtcaaagctagaacagaggtgtagagacaaaatttcgtttatttagaaggggttaggagaatg |
211 |
Q |
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| T |
9821353 |
aacttgaagaaagcttgagaaaggttaatacatgaatgtcaaagctagaatagaggtttagagacaaaatttcgttcatttagaagaggttaggagaatg |
9821452 |
T |
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| Q |
212 |
gaggtgttgctgtactttctgcataatgggtgttgtttcttcat |
255 |
Q |
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| T |
9821453 |
gaggtgttgctgtactttcttcataatgggtgttgtttcttcat |
9821496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 44061349 - 44061210
Alignment:
| Q |
115 |
ttgaaggaagcttgagaaaggttaatacatgaatgtcaaagctagaacagaggtgtagagacaaaatttcgtttatttagaaggggttaggagaatggag |
214 |
Q |
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| T |
44061349 |
ttgaaggaagctatagaaaggttaatacttgaatgttgaagctagaataggggtttagagaccagaatttgtgctttttgaagggtttatgagaagggaa |
44061250 |
T |
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| Q |
215 |
gtgttgctgtactttctgcataatgggtgttgtttcttca |
254 |
Q |
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| T |
44061249 |
gtgttgctgtattttctgcagaatcagtgttctttcttca |
44061210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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