View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6880_low_16 (Length: 253)
Name: NF6880_low_16
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6880_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 17772699 - 17772475
Alignment:
| Q |
18 |
aaatacatataaaccataataataatatctcacctttgatgtcgaatgacgcaaaagtagatgtaaatcatggtatctcttttggaggaggctgagcata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
17772699 |
aaatacatataaaccataataataatatctcacctttgatgtcgaatgacgcaaaagtagatgtaaatcatggtttctctttcggaggaggctgagcata |
17772600 |
T |
|
| Q |
118 |
gggtcgacaaattcactttcacgcagggaaaagacatcaagatatgcttcctccatactctgcaagttgccaatgatgcccaatgtggcttttgtgatgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17772599 |
gggtcgacaaattcactttcacgcagggaaaagacatcaagatatgcttcctccatactctgcaagttgccaatgatgcccaatgtggcttttgtgatgc |
17772500 |
T |
|
| Q |
218 |
taccgctaccgctaccaccattcat |
242 |
Q |
| |
|
|||||||||| |||||||| ||||| |
|
|
| T |
17772499 |
taccgctaccactaccaccgttcat |
17772475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 20506964 - 20506784
Alignment:
| Q |
25 |
tataaaccataataataatatctcacctttgatgtcgaatgacgcaaaagtagatgtaaatcatggtatctcttttggaggaggctgagcatagggtcga |
124 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||| | | | | ||||| ||||||||||||||| |
|
|
| T |
20506964 |
tataaaccataatagtaaaacttcacctttgatgtcgaatgacgcagaagtagatgtaaatcaccatctagatctcggaggtatttgagcatagggtcga |
20506865 |
T |
|
| Q |
125 |
caaattcactttcacgcagggaaaagacatcaagatatgcttcctccatactctgcaagttgccaatgatgcccaatgtgg |
205 |
Q |
| |
|
|||||||||||||| || |||||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
20506864 |
taaattcactttcacacaaggaaaaaaaatcaagatatgcttcctccatgctctgcaagttgccaatgatgccaaatgtgg |
20506784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 25031326 - 25031511
Alignment:
| Q |
17 |
aaaatacatataaaccataataataatatctcacctttgatgtcgaatgacgcaaaagtagatgtaaatcatggt-atctcttttggaggaggctgagca |
115 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||| |||| | ||||| ||||| | ||||||| |
|
|
| T |
25031326 |
aaaatacatataaaccataataataaaacttcacctttgatgtgaaatgacgcataagtagatgtatatcaccattatctc----ggaggtgtctgagca |
25031421 |
T |
|
| Q |
116 |
tagggtcgacaaattcactttcacgcagggaaaagacatcaagatatgcttcctccatactctgcaagttgccaatgatgcccaatgtgg |
205 |
Q |
| |
|
|||||| | |||||| ||| |||| |||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
25031422 |
cagggtccataaattctcttccacggagggaaaagacatcaaaatatgcttcctccacactctgcaagtttccaatgatgcccaatgtgg |
25031511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 24525176 - 24525082
Alignment:
| Q |
110 |
tgagcatagggtcgacaaattcactttcacgcagggaaaagacatcaagatatgcttcctccatactctgcaagttgccaatgatgcccaatgtg |
204 |
Q |
| |
|
|||| |||||||||||||||||||| || | ||||||||||||||||||| |||||||| ||||||| || ||| |||||| ||||||||||||| |
|
|
| T |
24525176 |
tgagaatagggtcgacaaattcactctctctcagggaaaagacatcaagaaatgcttccaccatactatgaaagatgccaacgatgcccaatgtg |
24525082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 30078342 - 30078253
Alignment:
| Q |
110 |
tgagcatagggtcgacaaattcactttcacgcagggaaaagacatcaagatatgcttcctccatactctgcaagttgccaatgatgccca |
199 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||| || |||||||||| |||||||| |
|
|
| T |
30078342 |
tgagaatagggtcgacaaattcactttcacgtgaggaaaagacatcgagaaatgcttccaccatactatgaaagttgccaacgatgccca |
30078253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 25896138 - 25896229
Alignment:
| Q |
110 |
tgagcatagggtcgacaaattcactttcacgcagggaaaagacatcaagatatgcttcctccatactctgcaagttgccaatgatgcccaat |
201 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||| |||||| |||||||| |||||| || || | |||||||||||||||| |
|
|
| T |
25896138 |
tgagaatagggtcgacaaattcgctttcaactggggaaaagacgtcaagaaatgcttccatcatactgtggaaatggccaatgatgcccaat |
25896229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 24489303 - 24489257
Alignment:
| Q |
151 |
acatcaagatatgcttcctccatactctgcaagttgccaatgatgcc |
197 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
24489303 |
acatcaagatatgcttcctccacagtttgcaagttgccaatgatgcc |
24489257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 26034215 - 26034132
Alignment:
| Q |
117 |
agggtcgacaaattcactttcacgcagggaaaagacatcaagatatgcttcctccatactctgcaagttgccaatgatgcccaa |
200 |
Q |
| |
|
|||||||||||||||||| ||| || ||||||||| ||| |||||||||||||| | || |||||||| ||||||||||| |
|
|
| T |
26034215 |
agggtcgacaaattcactctcaaaacggtaaaagacattgagaaatgcttcctccatagtgtgaaagttgcctatgatgcccaa |
26034132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 24525263 - 24525231
Alignment:
| Q |
47 |
tcacctttgatgtcgaatgacgcaaaagtagat |
79 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
24525263 |
tcacctttgatgttgaatgacgcaaaagtagat |
24525231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 36162235 - 36162172
Alignment:
| Q |
105 |
gaggctgagcatagggtcgacaaattcactttcacgcagggaaaagacatcaagatatgcttcc |
168 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
36162235 |
gaggttgagaatagggtcgacaaattcactttcagtcagggaaaagacatcaaaaaatgcttcc |
36162172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University