View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6880_low_19 (Length: 238)
Name: NF6880_low_19
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6880_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48687495 - 48687273
Alignment:
| Q |
1 |
catttacctctccaattacaccttctctgccttgtagtggactaagaaatggcctagcttctgatacattaggaagtaaagagacaaacaaagaaacaag |
100 |
Q |
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| T |
48687495 |
catttacctctccaattacaccttctctgccttgtagtggactaagaaatggcctagcttctgatacattaggaagtaaagagacaaacaaagaaacaag |
48687396 |
T |
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| Q |
101 |
aagaataaaagtgaggaatgtgacaaaggactttaatcttgtatccattttgaataaagatcaatacttattttgtgatcacacttagaagggtatctta |
200 |
Q |
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| T |
48687395 |
aagaataaaagtgaggaatgtgacaaaggactttaatcttgtatccattttgaataaagatcaatacttattttgtgatcacacttagaagggtatctta |
48687296 |
T |
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| Q |
201 |
gttttgatttgtattgatgaagt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
48687295 |
gttttgatttgtattgatgaagt |
48687273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 48680935 - 48680813
Alignment:
| Q |
1 |
catttacctctccaattacaccttctctgccttgtagtggactaagaaatggcctagcttctgatacattaggaagtaaagagacaaacaaagaaacaag |
100 |
Q |
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| T |
48680935 |
catttacctctccaattacaccttctttcccttgtaaaggattgagcaatgatctagcttctgatacattaggaagcaaagagacaaataagggaacacg |
48680836 |
T |
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| Q |
101 |
aagaataaaagtgaggaatgtga |
123 |
Q |
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| T |
48680835 |
aagaataagagtgaggaatgtga |
48680813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 48701064 - 48700997
Alignment:
| Q |
1 |
catttacctctccaattacaccttctctgccttgtagtggactaagaaatggcctagcttctgataca |
68 |
Q |
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| T |
48701064 |
catttacctctccaattacgccttctttgccttgtaatggactaagcaatggccttgcttctgataca |
48700997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 48697779 - 48697712
Alignment:
| Q |
1 |
catttacctctccaattacaccttctctgccttgtagtggactaagaaatggcctagcttctgataca |
68 |
Q |
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| T |
48697779 |
catttacctctccaattacagcttctttgccttgtaaaggactaagcaatggccttgcttctgataca |
48697712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 48693758 - 48693696
Alignment:
| Q |
6 |
acctctccaattacaccttctctgccttgtagtggactaagaaatggcctagcttctgataca |
68 |
Q |
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| T |
48693758 |
acctctccaatttcaccttctttgctttgtaatggactaagcaatggccttgcttctgataca |
48693696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 48693698 - 48693618
Alignment:
| Q |
84 |
acaaacaaagaaacaagaagaataaaagtgaggaatgtgacaaaggactttaatcttgtatccattttgaataaagatcaa |
164 |
Q |
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|||| ||| |||||||||||||||| ||||| |||||||||| |||| || | |||| |||||||||||||| || ||||| |
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| T |
48693698 |
acaagcaaggaaacaagaagaataagagtgaagaatgtgacagaggatttgagtcttatatccattttgaatgaaaatcaa |
48693618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 48700990 - 48700934
Alignment:
| Q |
93 |
gaaacaagaagaataaaagtgaggaatgtgacaaaggactttaatcttgtatccatt |
149 |
Q |
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|||||||||||||||| |||||||||||||| | |||| || | | ||||||||||| |
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| T |
48700990 |
gaaacaagaagaataagagtgaggaatgtgatagaggatttgagttttgtatccatt |
48700934 |
T |
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