View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6880_low_2 (Length: 666)

Name: NF6880_low_2
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6880_low_2
NF6880_low_2
[»] chr1 (1 HSPs)
chr1 (17-659)||(39494659-39495301)


Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 659
Target Start/End: Original strand, 39494659 - 39495301
Alignment:
Q  17 agaatgaaggtcagtaatatgaatcttccaattccatggacaatttcaaatatagagggctttttcgtgtgaagattttcacaaaattggttgggtagac 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39494659 agaatgaaggttagtaatatgaatcttccaattccatggacaatttcaaatatagagggctttttcgtgtgaagattttcacaaaattggttgggtagac 39494758  T
Q  117 acttcgcaccacaatatagttgaaaaagtctgtgatgttgacttgagatctttggtttgaattgtgctcatctttaaagttttaaattcgattctttcga 216  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| |||||| | ||| ||||||||| |||||||||||||||||    
T  39494759 acttcgcaccacaatatagttgaaaaagtctgtggtgttgacttgagacctttgatttggattgtgtttatccttaaagtttcaaattcgattctttcga 39494858  T
Q  217 tatcaatttaggtaaatcaatttatcttaaaaaatatagttgaaaatgtacctctaccttgacatcaattgcctaatagcatcttataagcaaatctcat 316  Q
    ||||||||| | |||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39494859 tatcaatttggataaaccgatttatcttaaaaaatatagctgaaaatgtacctctacctcgacatcaattgcctaatagcatcttataagcaaatctcat 39494958  T
Q  317 taaagaaaagttaaatatcctttcaaaaatagtagggtcgtatatattctttaatttcacctgtactgttgctatatatgttggctccaaggtccaccaa 416  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39494959 taaagaaaagttaaatatcctttcgaaaatagtagggtcgtatatattcttttatttcacctgtactgttgctatatatgttggctccaaggtccaccaa 39495058  T
Q  417 tgagccattctgatatgacctaattcttctccatttgcttttcatgttgatgttgtaaaatactaatgcacgtcactttatgtagtggcgaataaagaat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39495059 tgagccattctgatatgacctaattcttctccatttgcttttcatgttgatgttgtaaaatactaatgcacgtcactttatgtagtggcgaataaagaat 39495158  T
Q  517 atttttaaaaatattaggtcagagtttttgatgccctgtaacagnnnnnnnntagtttcttgacctaaacaaatatagaaaagttgaattaattaattga 616  Q
    |||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  39495159 atttttaaaaatattaggtcagaggttttgatgccctgtaacagaaaaaaaatagtttcttgacctaaacaaaaatagaaaagtcgaattaattaattga 39495258  T
Q  617 agacatatgaatctcagagtcaactacatttgtgatgtccatc 659  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  39495259 agacatatgaatctcagagtcaactacatttgtggtgtacatc 39495301  T

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