View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6880_low_3 (Length: 661)
Name: NF6880_low_3
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6880_low_3 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Original strand, 34358680 - 34359333
Alignment:
| Q |
1 |
aaaagcttttcaagaagtatatctaatgtttagaaaatttcaagttgacgaactagttggctacagcggtgtagaagattccacccaggtcaagcaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34358680 |
aaaagcttttcaagaagtatatctaatgtttagaaaatttcaagttgacgaactagttggctacggcggtgtagaagattccacccaggtcaagcaattg |
34358779 |
T |
|
| Q |
101 |
ttaggatcaaatgaagtggtttgtgtccgaggaaaatactccgggaagaatgggttgagcaagtttcgaatggaacgcggacttgagaggtggactgtcg |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34358780 |
ttgggatcaaatgaagtggtttgtgtccgaggaaaatactccgggaagaatgggttgagcaagtttcgaatggaacgtggacttgagaggtggactgtcg |
34358879 |
T |
|
| Q |
201 |
agtgcagctgtggtgctaaggatgatgatggagagagaatgatggcttgtgatatgtgtggtgtgtggcggcacactaggtgttttggcattcctgatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34358880 |
agtgcagctgtggtgctaaggatgatgatggagagagaatgatggcttgtgatatgtgtggtgtgtggcggcacactaggtgttttggcattcctgatac |
34358979 |
T |
|
| Q |
301 |
tgctcctgttccagcccgttttgtttgttcgagatgccaaaactgtgactcaaagcttaaatccggtgggcactgtaaagatgagactgtggctagtgtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34358980 |
tgctcctgttccagcccgttttgtttgttcgagatgccaaaactgtgactcaaagcttaaatccggtgggcactgtaaagatgagactgtggctagtgtt |
34359079 |
T |
|
| Q |
401 |
actacaactagtggtagttacatgggaaacagcttttcagtgccttctaatattcgttaaggtatttatttgattagacgtgtatataaagctttgattt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
34359080 |
actacaactagtggtagttacatgggaaacagcttttcagtgccttctaatattcgttaaggtattta-ctgattagatgtgtatataaagctttgattt |
34359178 |
T |
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| Q |
501 |
tattttgcctgaaatagcctgtaaataacagataggcattggtgggacagggcatgtcttgttcatatttcaggttctacttttgttcgtttcttctgta |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34359179 |
tattttgcctgaaatagcctgtaaataacagataggcattggtgggacagggcatgtcttgttcatatttcaggttctacttttgttcgtttcttctgta |
34359278 |
T |
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| Q |
601 |
catacaaacaaatgggggnnnnnnnntctaacttaaatggcctagtaacttctct |
655 |
Q |
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| T |
34359279 |
catacaaacaaatgggggaaaaaaaatctaacttaaatggcctagtaacttctct |
34359333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 18963 - 19021
Alignment:
| Q |
155 |
ttgagcaagtttcgaatggaacgcggacttgagaggtggactgtcgagtgcagctgtgg |
213 |
Q |
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|||||||||| || ||||||||| ||| |||||||||||||| | || ||||||||||| |
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| T |
18963 |
ttgagcaagtctcaaatggaacggggaattgagaggtggactatggattgcagctgtgg |
19021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 33183205 - 33183157
Alignment:
| Q |
221 |
gatgatgatggagagagaatgatggcttgtgatatgtgtggtgtgtggc |
269 |
Q |
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||||||||||| ||||||||| ||||||||||||| |||| ||||||| |
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| T |
33183205 |
gatgatgatggtgagagaatggtggcttgtgatatttgtgaagtgtggc |
33183157 |
T |
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