View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6880_low_4 (Length: 546)
Name: NF6880_low_4
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6880_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 230 - 539
Target Start/End: Complemental strand, 11326084 - 11325774
Alignment:
| Q |
230 |
atggttattgtcttaataattt-gacggtgccaaattacgaggtagtagattttggctttggttgatttacattgtaatgttattgaactggaatatatg |
328 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11326084 |
atggttattgtcttaataattttgacggtgccaaattacgaggtagtagattttggctttggttgatttacattgtaatgttattgaactggaatatatg |
11325985 |
T |
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| Q |
329 |
caagaacgaacgataagattattctttggtctatcgaccattttcttcctaggtttaagaatctcttctttggtcccttaatgatgacactaggattctt |
428 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11325984 |
caggaacgaacgataagattattctttggtctatcgaccattttcttcctaggtttaagaatctcttctttggttccttaatgatgacactaggattctt |
11325885 |
T |
|
| Q |
429 |
ttaactcgtcttcagtggagattggaagaaatattatgcaggtgatgaaagaaggcttcgagacgatagtttcttcaaataaccctcaatcggaattttt |
528 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11325884 |
ttaactcatcttcagtggagattggaagcaatattatgcaggtgatgaaagaaggcttcaagacgatagtttcttcaaataaccctcaatcggaattttt |
11325785 |
T |
|
| Q |
529 |
gcttcatctca |
539 |
Q |
| |
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|||| |||||| |
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| T |
11325784 |
gctttatctca |
11325774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 230 - 539
Target Start/End: Complemental strand, 11484105 - 11483795
Alignment:
| Q |
230 |
atggttattgtcttaataattt-gacggtgccaaattacgaggtagtagattttggctttggttgatttacattgtaatgttattgaactggaatatatg |
328 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11484105 |
atggttattgtcttaataattttgacggtgccaaattacgaggtagtagattttggctttggttgatttacattgtaatgttattgaactggaatatatg |
11484006 |
T |
|
| Q |
329 |
caagaacgaacgataagattattctttggtctatcgaccattttcttcctaggtttaagaatctcttctttggtcccttaatgatgacactaggattctt |
428 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11484005 |
caggaacgaacgataagattattctttggtctatcgaccattttcttcctaggtttaagaatctcttctttggttccttaatgatgacactaggattctt |
11483906 |
T |
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| Q |
429 |
ttaactcgtcttcagtggagattggaagaaatattatgcaggtgatgaaagaaggcttcgagacgatagtttcttcaaataaccctcaatcggaattttt |
528 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11483905 |
ttaactcatcttcagtggagattggaagcaatattatgcaggtgatgaaagaaggcttcaagacgatagtttcttcaaataaccctcaatcggaattttt |
11483806 |
T |
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| Q |
529 |
gcttcatctca |
539 |
Q |
| |
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|||| |||||| |
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| T |
11483805 |
gctttatctca |
11483795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 11326239 - 11326082
Alignment:
| Q |
18 |
acaatccataacaagaatcattaataaattgatttacttgacattaggaatttaggaccaaattattggtttattcttgaaacaaaacaatggatagaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11326239 |
acaatccataacaagaatcattaataaattgatttacttgacattacgaatttaggaccaaattattggtttattcttgaaacaaaacaatggatagaat |
11326140 |
T |
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| Q |
118 |
gatttttatttacaagcaaatgcaaggataaactgatgtggggctctctctggttatg |
175 |
Q |
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| T |
11326139 |
gatttttatttacaagcaaatgcatggataaactgatgtggggctctctctggttatg |
11326082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 11484260 - 11484103
Alignment:
| Q |
18 |
acaatccataacaagaatcattaataaattgatttacttgacattaggaatttaggaccaaattattggtttattcttgaaacaaaacaatggatagaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11484260 |
acaatccataacaagaatcattaataaattgatttacttgacattacgaatttaggaccaaattattggtttattcttgaaacaaaacaatggatagaat |
11484161 |
T |
|
| Q |
118 |
gatttttatttacaagcaaatgcaaggataaactgatgtggggctctctctggttatg |
175 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11484160 |
gatttttatttacaagcaaatgcatggataaactgatgtggggctctctctggttatg |
11484103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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