View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6880_low_6 (Length: 451)
Name: NF6880_low_6
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6880_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 32154018 - 32153646
Alignment:
| Q |
1 |
ctcgaagttccttcagatacttcgagtctcaagtttataatacaggtttgtagtgttgatgggacaattcaggcattggatgagtctccatattatcaat |
100 |
Q |
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| T |
32154018 |
ctcgaagttccttcagatacttctagtctcaagtttataatacaggtttgtagtgttgatgggacaattcaggcattggatgagtctccatattatcaat |
32153919 |
T |
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| Q |
101 |
tggaggttgaaggtccctaaattgtaattagaatgtaacattgtttctgctattaaggatctattttagatctggacttggcagatatatattaggctta |
200 |
Q |
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| T |
32153918 |
tggaggttgaaggtccctaaattgtaattagaatgtaacattgtttctgctattaaggatctattttagatctggacttggcagatatatattaggctta |
32153819 |
T |
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| Q |
201 |
tggtgcagcaagtaataaagcttatctttgcagcttatacctaataaaaatgtttctatcnnnnnnnggtgaaagtataaaaatgcttcttatctgattt |
300 |
Q |
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| T |
32153818 |
tgatgcagcaagtaataaagcttatctttgcagcttatacctaataaaaatgtttctatctttttttggtgaaagtataaaaatgcttcttatctgattt |
32153719 |
T |
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| Q |
301 |
catacactatatacaagtgcaggaccaaatgctgaatctttatttttaactttctttgtggacttggttatgt |
373 |
Q |
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| T |
32153718 |
catacactatatacaagtgcaggaccaaatgctgaatctttatttttaactttttttgtggacttggttatgt |
32153646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 32153623 - 32153577
Alignment:
| Q |
392 |
ttgtgaacttggtaaaattttatttttatattaaacagtcaaaattg |
438 |
Q |
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| T |
32153623 |
ttgtgaacttggtaaatttttatttttatattaaacagtcaaaattg |
32153577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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