View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6880_low_7 (Length: 450)

Name: NF6880_low_7
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6880_low_7
NF6880_low_7
[»] chr4 (20 HSPs)
chr4 (1-433)||(10459829-10460261)
chr4 (338-435)||(10554404-10554501)
chr4 (153-245)||(10571883-10571975)
chr4 (154-245)||(10554154-10554245)
chr4 (10-127)||(10571722-10571839)
chr4 (351-430)||(10463488-10463567)
chr4 (348-430)||(10474430-10474512)
chr4 (351-430)||(6387444-6387523)
chr4 (351-430)||(8444208-8444287)
chr4 (164-202)||(8437722-8437760)
chr4 (164-202)||(8448238-8448276)
chr4 (16-66)||(10463852-10463902)
chr4 (369-414)||(831567-831612)
chr4 (171-208)||(6392255-6392292)
chr4 (18-79)||(10554000-10554061)
chr4 (351-430)||(8437903-8437982)
chr4 (162-208)||(6387672-6387718)
chr4 (164-202)||(8444030-8444068)
chr4 (351-428)||(8448416-8448493)
chr4 (338-391)||(10572134-10572187)
[»] chr3 (6 HSPs)
chr3 (335-415)||(25902014-25902094)
chr3 (335-415)||(25916041-25916121)
chr3 (155-198)||(25915882-25915925)
chr3 (159-209)||(25901862-25901912)
chr3 (24-72)||(25901727-25901775)
chr3 (24-72)||(25915745-25915793)
[»] chr2 (1 HSPs)
chr2 (357-433)||(25376374-25376450)
[»] chr1 (2 HSPs)
chr1 (369-422)||(50646235-50646288)
chr1 (164-208)||(50646042-50646086)
[»] chr8 (3 HSPs)
chr8 (373-435)||(42847339-42847401)
chr8 (369-432)||(40862871-40862934)
chr8 (163-208)||(42847129-42847174)
[»] chr6 (1 HSPs)
chr6 (369-403)||(16470887-16470921)


Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 10460261 - 10459829
Alignment:
Q  1 ctatataaccacggaatgctaccaccttataagtttcattcgaattatcataaccaaaagcgaacttaaaattactaggcaaggagattgaaattcttct 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10460261 ctatataaccacggaatgctaccaccttataagtttcagtcgaattatcataaccaaaagcaaacttaaaattactaggcaaggagattgaaattcttct 10460162  T
Q  101 agagtaagtcctcgtggctgggttccaaaaaatgagcgaatcataactgccggagcaatgaatatcaatcaagcatagcaatccattgcatgaaccaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10460161 agagtaagtcctcgtggctgggttccaaaaaatgagcgaatcataactgccggagcaatgaatatcaatcaagcatagcaatccattgcatgaaccaaca 10460062  T
Q  201 acccaccatctttggtgattttcgtcaaatcgatggtaaggattgtcatgaagagtggtatgattcggatcgctttgaattaaacaagaaatagggaaag 300  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10460061 acccaccatctttggtaattttcgtcaaatcgatggtaaggattgtcatgaagagtggtatgattcggatcgctttgaattaaactagaaatagggaaag 10459962  T
Q  301 ttatgaatctacaatccctacaactgggattgtattgccacattaatgcaaggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaagg 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10459961 ttatgaatctacaatccctacaactgggattgtgttgccacattaatgcaaggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaagg 10459862  T
Q  401 atcggagaggagagtgttgaaaaatttgttaac 433  Q
    |||||||||||||||||||||||||||||||||    
T  10459861 atcggagaggagagtgttgaaaaatttgttaac 10459829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 10554404 - 10554501
Alignment:
Q  338 ccacattaatgcaaggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttgttaacac 435  Q
    |||||||| ||||||||| || |||||||||||||| ||||||||||||||||| |||| ||||| ||||| | | || |||||||| ||||||||||    
T  10554404 ccacattagtgcaaggtgtggatttcgtgatgatttattgagatgcatttgaacaaagtcaggattggagatgcgggttttgaaaaacttgttaacac 10554501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 10571883 - 10571975
Alignment:
Q  153 gagcaatgaatatcaatcaagcatagcaatccattgcatgaaccaacaacccaccatctttggtgattttcgtcaaatcgatggtaaggattg 245  Q
    ||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||| | |||| ||| ||||| ||||| | ||||||||||    
T  10571883 gagcattgaacatcaatcaagcacaacaatccattgcatgaaccaacaacccaccatgtgtggtaattctcgtccaatcggtagtaaggattg 10571975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 10554154 - 10554245
Alignment:
Q  154 agcaatgaatatcaatcaagcatagcaatccattgcatgaaccaacaacccaccatctttggtgattttcgtcaaatcgatggtaaggattg 245  Q
    |||| |||| |||||||||||| | ||||||||||||||||||||||||||||||| | |||| ||| ||||| ||||| | ||||||||||    
T  10554154 agcattgaacatcaatcaagcacaacaatccattgcatgaaccaacaacccaccatgtgtggtaattctcgtccaatcggtagtaaggattg 10554245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 10571722 - 10571839
Alignment:
Q  10 cacggaatgctaccaccttataagtttcattcgaattatcataaccaaaagcgaacttaaaattactaggcaaggagattgaaattcttctagagtaagt 109  Q
    |||| ||||||||||||||||| |||| | | ||| ||||||| ||||||| |||||||||||||||||| || || | |||| |||||||||| | |||    
T  10571722 cacgaaatgctaccaccttatatgttttacttgaaatatcatagccaaaagagaacttaaaattactagggaaagataatgaagttcttctagatttagt 10571821  T
Q  110 cctcgtggctgggttcca 127  Q
     || || |||||||||||    
T  10571822 tcttgtagctgggttcca 10571839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 10463567 - 10463488
Alignment:
Q  351 aggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttgtt 430  Q
    ||||||||||||||||  || || || ||||||||||||||||||| |||||| || | ||||||||| |||||||||||    
T  10463567 aggtgcgggtttcgtgcagaattttttagatgcatttgaacgaagtgaggatcagatatgagagtgttaaaaaatttgtt 10463488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 10474512 - 10474430
Alignment:
Q  348 gcaaggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttgtt 430  Q
    |||||||| |||||| |||  || || || ||||||||||||||||||| |||||| |||| ||||||||| |||||||||||    
T  10474512 gcaaggtgtgggttttgtgcggaattttttagatgcatttgaacgaagtgaggatcagagatgagagtgttaaaaaatttgtt 10474430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 6387523 - 6387444
Alignment:
Q  351 aggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttgtt 430  Q
    |||||||||||||||  |||||| |||||||||| || |||||| | |||||| |||| || |||||||||||| |||||    
T  6387523 aggtgcgggtttcgtactgatttattgagatgcacttcaacgaattgaggatcagagatgacagtgttgaaaaacttgtt 6387444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 8444208 - 8444287
Alignment:
Q  351 aggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttgtt 430  Q
    |||||||||||||||   |||||||||||||| |||| ||| ||||  ||||| |||| ||||||||||||| |||||||    
T  8444208 aggtgcgggtttcgttccgatttcttgagatggattttaacaaagttgggatcagagatgagagtgttgaaagatttgtt 8444287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 8437722 - 8437760
Alignment:
Q  164 atcaatcaagcatagcaatccattgcatgaaccaacaac 202  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  8437722 atcaagcaagcatagcaatccattgcatgaaccaacaac 8437760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 8448238 - 8448276
Alignment:
Q  164 atcaatcaagcatagcaatccattgcatgaaccaacaac 202  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  8448238 atcaagcaagcatagcaatccattgcatgaaccaacaac 8448276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 10463902 - 10463852
Alignment:
Q  16 atgctaccaccttataagtttcattcgaattatcataaccaaaagcgaact 66  Q
    |||||||||||||||||||| ||||| | |||||||||||||||| |||||    
T  10463902 atgctaccaccttataagttccattcaagttatcataaccaaaagagaact 10463852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 831612 - 831567
Alignment:
Q  369 gatttcttgagatgcatttgaacgaagtaaggatcggagaggagag 414  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||||    
T  831612 gatttcttgagatgcttttgaacgaagtaaggatcagagatgagag 831567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 6392292 - 6392255
Alignment:
Q  171 aagcatagcaatccattgcatgaaccaacaacccacca 208  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  6392292 aagcatagcaatccattgcatgaaccaacaagccacca 6392255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 10554000 - 10554061
Alignment:
Q  18 gctaccaccttataagtttcattcgaattatcataaccaaaagcgaacttaaaattactagg 79  Q
    |||||||||||||| |||| | | ||| ||||||| ||||||| ||||||||||||||||||    
T  10554000 gctaccaccttatatgttttacttgaaatatcatagccaaaagagaacttaaaattactagg 10554061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 8437903 - 8437982
Alignment:
Q  351 aggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttgtt 430  Q
    |||||| ||||||||   |||||||||||||| |||| ||| ||||  ||||| |||| ||||||||||||| |||||||    
T  8437903 aggtgctggtttcgttccgatttcttgagatgtattttaacaaagttgggatcagagatgagagtgttgaaagatttgtt 8437982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 6387718 - 6387672
Alignment:
Q  162 atatcaatcaagcatagcaatccattgcatgaaccaacaacccacca 208  Q
    |||||||||||||||||||||||||| ||  ||||||| ||||||||    
T  6387718 atatcaatcaagcatagcaatccattacaccaaccaacgacccacca 6387672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 8444030 - 8444068
Alignment:
Q  164 atcaatcaagcatagcaatccattgcatgaaccaacaac 202  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  8444030 atcaagcaagcagagcaatccattgcatgaaccaacaac 8444068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 428
Target Start/End: Original strand, 8448416 - 8448493
Alignment:
Q  351 aggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttg 428  Q
    |||||||||||| ||   ||||||||||||||||||| ||| || |||||||| ||||  ||||||| |||| |||||    
T  8448416 aggtgcgggttttgttccgatttcttgagatgcattttaacaaaataaggatcagagataagagtgtagaaagatttg 8448493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 10572134 - 10572187
Alignment:
Q  338 ccacattaatgcaaggtgcgggtttcgtgatgatttcttgagatgcatttgaac 391  Q
    ||||||||  ||||||||||| ||| |||| ||||| |||||||||||||||||    
T  10572134 ccacattagggcaaggtgcggattttgtgacgatttattgagatgcatttgaac 10572187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 25902014 - 25902094
Alignment:
Q  335 ttgccacattaatgcaaggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaaggatcggagaggagagt 415  Q
    ||||||||||||||| || || ||||||| ||  ||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  25902014 ttgccacattaatgcgagatgtgggtttcttgcagatttctcgagatgcatttgaacgaaataaggatcggagatgagagt 25902094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 25916041 - 25916121
Alignment:
Q  335 ttgccacattaatgcaaggtgcgggtttcgtgatgatttcttgagatgcatttgaacgaagtaaggatcggagaggagagt 415  Q
    ||||||||||||||| || || ||||||| ||  ||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  25916041 ttgccacattaatgcgagatgtgggtttcttgcagatttctcgagatgcatttgaacgaaataaggatcggagatgagagt 25916121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 25915882 - 25915925
Alignment:
Q  155 gcaatgaatatcaatcaagcatagcaatccattgcatgaaccaa 198  Q
    |||||||| ||||| |||||||||||||||||||||||||||||    
T  25915882 gcaatgaaaatcaaccaagcatagcaatccattgcatgaaccaa 25915925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 25901862 - 25901912
Alignment:
Q  159 tgaatatcaatcaagcatagcaatccattgcatgaaccaacaacccaccat 209  Q
    |||||||||| |||||||||||||||||||||| |||||| || |||||||    
T  25901862 tgaatatcaaccaagcatagcaatccattgcataaaccaataatccaccat 25901912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 25901727 - 25901775
Alignment:
Q  24 accttataagtttcattcgaattatcataaccaaaagcgaacttaaaat 72  Q
    ||||||||||||| | || || ||||||||||||||| |||||||||||    
T  25901727 accttataagttttactcaaaatatcataaccaaaagagaacttaaaat 25901775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 25915745 - 25915793
Alignment:
Q  24 accttataagtttcattcgaattatcataaccaaaagcgaacttaaaat 72  Q
    ||||||||||||| | || || ||||||||||||||| |||||||||||    
T  25915745 accttataagttttactcaaagtatcataaccaaaagagaacttaaaat 25915793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 433
Target Start/End: Complemental strand, 25376450 - 25376374
Alignment:
Q  357 gggtttcgtgatgatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttgttaac 433  Q
    |||||||||  |||||| ||| |||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||    
T  25376450 gggtttcgttttgatttattgcgatgcatttgaacgaagtgaggatcggagatgagagttttgaaaaacttgttaac 25376374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 50646235 - 50646288
Alignment:
Q  369 gatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaa 422  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||    
T  50646235 gatttcttgagatgcatttgaacgaagtaaggatcagagatgagagttttgaaa 50646288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 50646042 - 50646086
Alignment:
Q  164 atcaatcaagcatagcaatccattgcatgaaccaacaacccacca 208  Q
    ||||||||| || || |||||||||||||||||| ||||||||||    
T  50646042 atcaatcaaacaaagtaatccattgcatgaaccagcaacccacca 50646086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 42847339 - 42847401
Alignment:
Q  373 tcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttgttaacac 435  Q
    |||||||||||||||||| ||||||||||||  | | ||||||||||||||| ||||||||||    
T  42847339 tcttgagatgcatttgaatgaagtaaggatcatatacgagagtgttgaaaaacttgttaacac 42847401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 40862934 - 40862871
Alignment:
Q  369 gatttcttgagatgcatttgaacgaagtaaggatcggagaggagagtgttgaaaaatttgttaa 432  Q
    ||||| ||||||||| |||||||||||||| |||| |||| |||||| || ||||| |||||||    
T  40862934 gatttattgagatgcttttgaacgaagtaacgatcagagatgagagtttttaaaaacttgttaa 40862871  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 42847129 - 42847174
Alignment:
Q  163 tatcaatcaagcatagcaatccattgcatgaaccaacaacccacca 208  Q
    |||||||||| || | ||||||||||||||||||| ||||||||||    
T  42847129 tatcaatcaaacaaatcaatccattgcatgaaccagcaacccacca 42847174  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 403
Target Start/End: Original strand, 16470887 - 16470921
Alignment:
Q  369 gatttcttgagatgcatttgaacgaagtaaggatc 403  Q
    ||||| |||||||||||||||||||||||||||||    
T  16470887 gattttttgagatgcatttgaacgaagtaaggatc 16470921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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