View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6880_low_8 (Length: 447)
Name: NF6880_low_8
Description: NF6880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6880_low_8 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 38275603 - 38275192
Alignment:
| Q |
18 |
actgtgatgagaaagggataaaattacttcaagatctgcatctgcacttgtatggggtcttttatatgtgaaacctgtgatcacattgcagaatattcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275603 |
actgtgatgagaaagggataaaattacttcaagatctgca------cttgtatggggtcttttatatgtgaaacctgtgatcacattgcagaatattcaa |
38275510 |
T |
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| Q |
118 |
tttcttatttatcgccaaaggctctcctatctttcgaactaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275509 |
tttcttatttatcgccaaaggctctcctatctttcgaactaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
38275410 |
T |
|
| Q |
218 |
tttatgcattttcccccctttcgttatcaaagatatatttattttctcaacagtcggtaagatgtttgttatccacgtctctaggtgtcaatgtattttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275409 |
tttatgcattttcccccctttcgttatcaaagatatatttattttctcaacagtcggtaagatgtttgttatccacgtctctaggtgtcaatgtattttg |
38275310 |
T |
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| Q |
318 |
tgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaagaatggatgatgtggttatagttttcggttctcttttatttcatcaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275309 |
tgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaagaatggatgatgtggttatagttttcggttctcttttatttcatcaaa |
38275210 |
T |
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| Q |
418 |
ttcccttgttcgtgtgtg |
435 |
Q |
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| T |
38275209 |
ttcccttgtttgtgtgtg |
38275192 |
T |
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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 271 - 377
Target Start/End: Complemental strand, 36870555 - 36870449
Alignment:
| Q |
271 |
tcggtaagatgtttgttatccacgtctctaggtgtcaatgtattttgtgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaag |
370 |
Q |
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||||||||||||||||| | |||||||||||||||||||| |||| |||||| |||| ||||||||||| |||||| ||||||||||| |||||||| |
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| T |
36870555 |
tcggtaagatgtttgttcttcacgtctctaggtgtcaatgcatttcaagtgttctctgttatgcttttagatttgagaattctgagatgatgcaaggaag |
36870456 |
T |
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| Q |
371 |
aatggat |
377 |
Q |
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| T |
36870455 |
aatggat |
36870449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 37962355 - 37962416
Alignment:
| Q |
156 |
ctaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
217 |
Q |
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||||||||||| || |||||||||||| |||||||||||||||| |||||||||| ||||| |
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| T |
37962355 |
ctaaattgttggattgataactctaattgctagctggtgagttttaccttatccttttaatt |
37962416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 20392 - 20455
Alignment:
| Q |
154 |
aactaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
217 |
Q |
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|||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
20392 |
aactgaattgttggattcataactctaattgctagctggtgagttttatcttatccttttaatt |
20455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 16430410 - 16430473
Alignment:
| Q |
154 |
aactaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
217 |
Q |
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|||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
16430410 |
aactgaattgttggattcataactctaattgctagctggtgagttttatcttatccttttaatt |
16430473 |
T |
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