View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6881_low_1 (Length: 477)

Name: NF6881_low_1
Description: NF6881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6881_low_1
NF6881_low_1
[»] chr2 (6 HSPs)
chr2 (12-452)||(43777301-43777742)
chr2 (12-119)||(43781181-43781285)
chr2 (277-334)||(43780826-43780883)
chr2 (352-434)||(2995839-2995920)
chr2 (375-424)||(20625300-20625349)
chr2 (361-434)||(23914731-23914804)
[»] chr1 (4 HSPs)
chr1 (358-434)||(42561686-42561762)
chr1 (359-434)||(42560996-42561071)
chr1 (375-421)||(34969385-34969431)
chr1 (375-452)||(40368038-40368115)
[»] chr4 (5 HSPs)
chr4 (185-236)||(18159170-18159221)
chr4 (375-421)||(32547389-32547435)
chr4 (375-421)||(2133521-2133567)
chr4 (352-434)||(17982095-17982176)
chr4 (375-421)||(18419292-18419338)
[»] chr8 (3 HSPs)
chr8 (357-422)||(7718313-7718378)
chr8 (360-425)||(13765852-13765917)
chr8 (354-394)||(14537999-14538039)
[»] chr5 (3 HSPs)
chr5 (358-447)||(3955872-3955961)
chr5 (361-434)||(27175125-27175198)
chr5 (375-421)||(42027689-42027735)
[»] chr3 (1 HSPs)
chr3 (363-432)||(49758125-49758194)
[»] scaffold0002 (1 HSPs)
scaffold0002 (185-234)||(419157-419206)
[»] scaffold0009 (1 HSPs)
scaffold0009 (375-434)||(53670-53729)
[»] chr7 (1 HSPs)
chr7 (362-434)||(24650234-24650306)


Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 12 - 452
Target Start/End: Complemental strand, 43777742 - 43777301
Alignment:
Q  12 tgttggtgattatgctagttgtagctcaagctcatgctttttcgacatttttgattaattgtcgtttcgaatgcttaactagaacatgtttcagagacat 111  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  43777742 tgttggtgattatgctagttgtaactcaagctgatgctttttcgacattttttattaattgtcgtttcgaatgtttaactagaacatgtttcagagacat 43777643  T
Q  112 ttttcattatcgttcctgcgtcaagggatgttataaaatttgcaaacataaaaggttagctattaaatgatagttgatagctcatatattgttattcgta 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  43777642 ttttcattatcgttcctgcgtcaagggatgttataaaatttgcaaacataaaaggttagctattaaataatagttgatagctcagatattgttattcgta 43777543  T
Q  212 atatt-gatccaatttcatatcatcggaaagagaaaaaagctgatgggattaaagagaaagaaaccgttcaactagctgatgataagaacaatattatct 310  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43777542 atatttgatccgatttcatatcatcggaaagagaaagaagctgatgggattaaagagaaagaaaccgttcaactagctgataataagaacaatattatct 43777443  T
Q  311 ataacaatatataagagtctttaacaaaacaatatgcatgaggaatgagagattttgggctagatttttcattatttcaattattctctttaacaatctt 410  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43777442 ataacaatatataagagtctttaacaaaacaatatacatgaggaatgagagattttgggctagatttttcattatttcaattattctctttaacaatctt 43777343  T
Q  411 ttctataataatgatatattgttgctctagttgaaaaagata 452  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43777342 ttctataataatgatatattgttgctctagttgaaaaagata 43777301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 43781285 - 43781181
Alignment:
Q  12 tgttggtgattatgctagttgtagctcaagctcatgctttttcgacatttttgattaattgtcgtttcgaatgcttaactagaacatgtttcagagacat 111  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| |||||   ||| | |||||| ||| ||| ||||| | ||||||||| ||||||||    
T  43781285 tgttggtgattatgctagttgtaactcaacctcatgctttttcgccattt---attgaatgtcgtgtcggatgtttaacgataacatgttttagagacat 43781189  T
Q  112 ttttcatt 119  Q
    ||| ||||    
T  43781188 tttccatt 43781181  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 43780883 - 43780826
Alignment:
Q  277 gttcaactagctgatgataagaacaatattatctataacaatatataagagtctttaa 334  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||    
T  43780883 gttcaactaactgataataagaacaatattatctataacaatatataaaaatctttaa 43780826  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 434
Target Start/End: Original strand, 2995839 - 2995920
Alignment:
Q  352 ggaatgagagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 434  Q
    ||||||||| ||||||  ||| ||||||||||||| ||||||  | ||| |||||  ||||||||| ||||||||||||||||    
T  2995839 ggaatgagatattttgacctacatttttcattattccaattacac-cttaaacaaaattttctatagtaatgatatattgttg 2995920  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 20625300 - 20625349
Alignment:
Q  375 tttttcattatttcaattattctctttaacaatcttttctataataatga 424  Q
    ||||||||||| |||||||| ||||  |||||| ||||||||||||||||    
T  20625300 tttttcattatctcaattatactctaaaacaattttttctataataatga 20625349  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 434
Target Start/End: Original strand, 23914731 - 23914804
Alignment:
Q  361 gattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 434  Q
    |||||||| || |||||||||||||| ||||||| ||||| |||||  ||  |||||| |||| ||||||||||    
T  23914731 gattttggactggatttttcattattccaattatactcttaaacaaatttgcctataagaatgttatattgttg 23914804  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 434
Target Start/End: Complemental strand, 42561762 - 42561686
Alignment:
Q  358 agagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 434  Q
    ||||||||||||||   |||||||||||| ||||||||| ||| |||||  |||||||||| |||| ||||||||||    
T  42561762 agagattttgggctgactttttcattattccaattattcccttcaacaaatttttctataacaatgttatattgttg 42561686  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 434
Target Start/End: Complemental strand, 42561071 - 42560996
Alignment:
Q  359 gagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 434  Q
    ||||||||||  | |||||||||||||| ||||||| | ||| |||||  ||||||||||||||| ||||||||||    
T  42561071 gagattttggattggatttttcattattccaattatacccttaaacaaatttttctataataatgttatattgttg 42560996  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 34969431 - 34969385
Alignment:
Q  375 tttttcattatttcaattattctctttaacaatcttttctataataa 421  Q
    |||||||||||| ||||||| ||||| |||||| |||||||||||||    
T  34969431 tttttcattattccaattatactcttaaacaattttttctataataa 34969385  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 452
Target Start/End: Original strand, 40368038 - 40368115
Alignment:
Q  375 tttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttgctctagttgaaaaagata 452  Q
    |||||||||||| ||||||| | ||| |||||  ||||||||| ||||| |||||||||| | |  ||||||||||||    
T  40368038 tttttcattattccaattatacccttaaacaaatttttctatattaatgttatattgttggtgtcattgaaaaagata 40368115  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 18159221 - 18159170
Alignment:
Q  185 ttgatagctcatatattgttattcgtaatattgatccaatttcatatcatcg 236  Q
    ||||||||||| |||||||||||||| |||||||||| |||| |||||||||    
T  18159221 ttgatagctcagatattgttattcgtgatattgatccgattttatatcatcg 18159170  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 32547435 - 32547389
Alignment:
Q  375 tttttcattatttcaattattctctttaacaatcttttctataataa 421  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||    
T  32547435 tttttcattatttcaattatactcttaaacaattttttctataataa 32547389  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 2133521 - 2133567
Alignment:
Q  375 tttttcattatttcaattattctctttaacaatcttttctataataa 421  Q
    ||||||||||| |||||||| ||||| |||||| |||||||||||||    
T  2133521 tttttcattatctcaattatactcttaaacaattttttctataataa 2133567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 434
Target Start/End: Original strand, 17982095 - 17982176
Alignment:
Q  352 ggaatgagagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 434  Q
    ||||||||| ||||||  ||| ||||||||||||| ||||||  | ||| |||||  ||||||||| ||||||||||||||||    
T  17982095 ggaatgagatattttgacctacatttttcattattccaattacac-cttaaacaaaattttctatagtaatgatatattgttg 17982176  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 18419292 - 18419338
Alignment:
Q  375 tttttcattatttcaattattctctttaacaatcttttctataataa 421  Q
    |||||||||||||||||||| | ||| |||||| |||||||||||||    
T  18419292 tttttcattatttcaattatacccttgaacaattttttctataataa 18419338  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 422
Target Start/End: Complemental strand, 7718378 - 7718313
Alignment:
Q  357 gagagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataat 422  Q
    |||||||||||| |||||||||||||||||  ||||||   ||| ||||| |||||||||||||||    
T  7718378 gagagattttggactagatttttcattattctaattatatccttgaacaaacttttctataataat 7718313  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 13765852 - 13765917
Alignment:
Q  360 agattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgat 425  Q
    ||||||||||||  |||||||||||| | |||||| ||||  |||||| |||||||||||||||||    
T  13765852 agattttgggctgaatttttcattatctaaattatactctaaaacaattttttctataataatgat 13765917  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 14537999 - 14538039
Alignment:
Q  354 aatgagagattttgggctagatttttcattatttcaattat 394  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  14537999 aatgagagattttgggctatattttttattatttcaattat 14538039  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 447
Target Start/End: Complemental strand, 3955961 - 3955872
Alignment:
Q  358 agagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttgctctagttgaaaa 447  Q
    |||||||||||| | |||||||||||||| ||||| | |  || |||||  |||||| ||||||||||||||||||| | | ||||||||    
T  3955961 agagattttgggttggatttttcattattccaattgtacctttaaacaaatttttctttaataatgatatattgttgatgtcgttgaaaa 3955872  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 434
Target Start/End: Original strand, 27175125 - 27175198
Alignment:
Q  361 gattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 434  Q
    ||||||||||| |||||||  ||||| ||||||| |  || |||||| ||||||||||||||| ||||||||||    
T  27175125 gattttgggctggattttttgttattccaattataccattaaacaatgttttctataataatgttatattgttg 27175198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 42027735 - 42027689
Alignment:
Q  375 tttttcattatttcaattattctctttaacaatcttttctataataa 421  Q
    ||||||||||| |||||||| ||||| |||||| |||||||||||||    
T  42027735 tttttcattatctcaattatactcttaaacaattttttctataataa 42027689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 49758194 - 49758125
Alignment:
Q  363 ttttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgt 432  Q
    ||||||| | ||||||| |||||||||||||| | ||| |||||| ||||||||||||||  ||||||||    
T  49758194 ttttgggttggattttttattatttcaattatacccttaaacaattttttctataataatattatattgt 49758125  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 419206 - 419157
Alignment:
Q  185 ttgatagctcatatattgttattcgtaatattgatccaatttcatatcat 234  Q
    ||||||||||| |||||||||||||| |||||||| | |||| |||||||    
T  419206 ttgatagctcagatattgttattcgtgatattgattcgattttatatcat 419157  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 434
Target Start/End: Original strand, 53670 - 53729
Alignment:
Q  375 tttttcattatttcaattattctctttaa-caatcttttctataataatgatatattgttg 434  Q
    ||||||||||||||||||||  ||||||| |||  ||||||||||||||| ||||||||||    
T  53670 tttttcattatttcaattata-tctttaaacaaatttttctataataatgttatattgttg 53729  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 24650234 - 24650306
Alignment:
Q  362 attttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 434  Q
    ||||| ||||| ||||||||||||||||||||  | ||| ||||| |||| || ||||||||  |||||||||    
T  24650234 attttaggctacatttttcattatttcaattaaacccttaaacaaactttcctgtaataatgcaatattgttg 24650306  T

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