View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6881_low_2 (Length: 388)
Name: NF6881_low_2
Description: NF6881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6881_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 25199588 - 25199843
Alignment:
| Q |
17 |
aatctaaggccaagcctaggatccacacttggcacatttaattgttgcatgatatgaacttgatttattgcaaaaataacatttggtttattgcatataa |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
25199588 |
aatctaaggccaagtctaggatccacacttggcacatttcattgttgcatgatatgcacttgatttattgcataattaacacttggtttattgcatataa |
25199687 |
T |
|
| Q |
117 |
attaaaa-gtttgtattacgaaacaaagtttctctgtttttccatacttcttgttctgaactatcttgacaccatagctcaggttcaatgacttgtaagt |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
25199688 |
attaaaaagtttgtattacgaaacaaagtttctctgtttttccatacttcttgttctgaactatcttgacaccagagctcaagttcaatgacttgtaagt |
25199787 |
T |
|
| Q |
216 |
gaaaaaagtgactaaaattaatcttaggataggggag-ttttttattaaggaaaag |
270 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25199788 |
gaaaaaattgactaaaattaatcttaggataggggagtttttttattaaggaaaag |
25199843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 25199837 - 25199920
Alignment:
| Q |
305 |
ggaaaaatagacattgtcatcatgttcatgaggtctaaaaacctcgaaatacgaaattttgtggccatattccaacccggcgag |
388 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25199837 |
ggaaaagtagacattgtcatcatgttcacgaggtctaaaaacctcgaaatacgaaatttcgtggccatattccaacccggcgag |
25199920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University