View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6881_low_3 (Length: 335)
Name: NF6881_low_3
Description: NF6881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6881_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 158 - 327
Target Start/End: Complemental strand, 31421327 - 31421158
Alignment:
| Q |
158 |
aaaaacgtgaatagcaacagagagaggtctccggcgtagcagacagccgtgtacggcgtagcagtcagatctggaacagattgggacaaactaaaacggg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
31421327 |
aaaaacgtgaatagcaacagagagaggtctccggcgtagcagacagccgtgtacggtgtagcagtcaaatctggaacagatcgggacaaactaaaacggg |
31421228 |
T |
|
| Q |
258 |
accggatcgaaaacattgaaaccatcaaggaaaagaaccaatagaagaagaagaaaccaccacaacacca |
327 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31421227 |
accggatcgaaaacattgaaaccctcaaggaaaagaaccaatagaagaagaagaaaccaccacaacacca |
31421158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31423629 - 31423596
Alignment:
| Q |
1 |
atcaacattcaaactcagcaaccacctcaaaatc |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
31423629 |
atcaacattcaaactcagcaaccacctcaaaatc |
31423596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University