View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6881_low_6 (Length: 237)
Name: NF6881_low_6
Description: NF6881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6881_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 5898046 - 5897838
Alignment:
| Q |
10 |
gtgaagaagcagagaactatacgtgttcagttgctgatcaagaatcaaggaaaagaactaaattgtacttatccatataacgtggctgcctcatatatag |
109 |
Q |
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| T |
5898046 |
gtgaagaagaagagaactatacgtgttcagttgctgatcaagaatcaaggaaaagaactaaattgtactcatccatataacgtggctgcctcatatatag |
5897947 |
T |
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| Q |
110 |
aattaatgaagcatgaattccatgccaatgagagattttcaggnnnnnnnggcaccattaccaagttagattgtgaattttgttccttttcaacaagtgc |
209 |
Q |
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| T |
5897946 |
aattaatgaagcatgaattccatgccaatgagagattttcagg-aaaaaaggcaccattaccaagttagattgtgaaatttgttccttttcaacaagtgc |
5897848 |
T |
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| Q |
210 |
ttatatatgc |
219 |
Q |
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|||||||||| |
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| T |
5897847 |
ttatatatgc |
5897838 |
T |
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