View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6882_high_12 (Length: 240)
Name: NF6882_high_12
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6882_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 9417382 - 9417606
Alignment:
| Q |
3 |
accgaaatatcaaatttttatttttatttatgccacatcattaatagttgtaaatatttttaaacctagttttagcaaataactatataaataagagcaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9417382 |
accgaaatatcaaatttttatttttatttatgccacatcattaatagttataaatatttttaaacctagttttagcaaataactatataaataagagcaa |
9417481 |
T |
|
| Q |
103 |
tccaaagttatatttacttttctgttaatttacgtatcacaactcagtctcaattctcatctatgtcaatctccatctcaatggagtact----ttacat |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
9417482 |
tccaaagttatatttacttttctgtcaatttacgtatcacaactcaatctcaattctcatctatgccaatctccatctcaatggagtactttacttacat |
9417581 |
T |
|
| Q |
199 |
tccaaggtttaatggagccaaataa |
223 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
9417582 |
tccaaggtttaatggagctaaataa |
9417606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University