View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6882_high_13 (Length: 213)
Name: NF6882_high_13
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6882_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 36778022 - 36777842
Alignment:
| Q |
13 |
gaagaatatcaacgtaatcaagttgcaacctttccaaactctcgtctacacttctggtcactctctctgcactaaaatcaaaaccctctttgtaccttcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36778022 |
gaagaatatcaacgtaatcaagttgcaacctttccaaactctcgtctacacttctggtcactctctctgcactaaaatcaaaaccctctttgtaccttcc |
36777923 |
T |
|
| Q |
113 |
acacttagttgctacaatgtattcacttctcggaacgttcaacgctttcaacgcctttccgagcactttctcagacagtgt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36777922 |
gcacttagttgctacaatgtattcacttctcggaacgttcaacgctttcaacgcctttccgagcactttctcagacagtgt |
36777842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University