View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6882_high_5 (Length: 365)
Name: NF6882_high_5
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6882_high_5 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 144 - 365
Target Start/End: Complemental strand, 42594300 - 42594079
Alignment:
| Q |
144 |
cggggaaaattgatagaccttaaaatcaacccaagcatctatggacaaggtgtgttgatccttggtcaaaagaaagtcgtgatgaaatttgagggtttct |
243 |
Q |
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| T |
42594300 |
cggggaaaattgatagaccttaaaatcaacccaagcatctatggacaaggtgtgttgatccttggtcaaaagaaaatcgtgatgaaatttgagggtttct |
42594201 |
T |
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| Q |
244 |
atccatatcttatggacgcgaacaacttcatcggcaaaaggattcaaaaaatggacgcctgtaggtagagtcttgaaatattttccgaatctttcaacaa |
343 |
Q |
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| T |
42594200 |
atccatatcttatggacgcgaacaacttcatcgacaaaaggattcaaaaaatggacgcctgtaggtagagtcttgaagtattttccgaatctctcaacaa |
42594101 |
T |
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| Q |
344 |
tatatactgtctgctccggcac |
365 |
Q |
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| T |
42594100 |
tatatactgtctgctccggcac |
42594079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 42594430 - 42594366
Alignment:
| Q |
13 |
atggacatcactaaggggacttttctgagctacataagaagcaagcttaggatccacaatctgcac |
78 |
Q |
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| T |
42594430 |
atggacagcactaaggggacttt-ctgagctacataagaagcaagcttaggatccacaatctgcac |
42594366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 365
Target Start/End: Complemental strand, 42577520 - 42577393
Alignment:
| Q |
238 |
gtttctatccatatcttatggacgcgaacaacttcatcggcaaaaggattcaaaaaatggacgcctgtaggtagagtcttgaaatattttccgaatcttt |
337 |
Q |
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| T |
42577520 |
gtttctatccatagcttatggacgcaagcaattttatcaacaaaagggatcaaaaaatggacgccggtaggaagagttttaaagtactttccatatcgct |
42577421 |
T |
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| Q |
338 |
caacaatatatactgtctgctccggcac |
365 |
Q |
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| T |
42577420 |
caatgatatacactgtctgctccggcac |
42577393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 42572892 - 42572858
Alignment:
| Q |
45 |
cataagaagcaagcttaggatccacaatctgcact |
79 |
Q |
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| T |
42572892 |
cataagaagcaagcttaggatccacaatctgcact |
42572858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 42570314 - 42570204
Alignment:
| Q |
255 |
atggacgcgaacaacttcatcggcaaaaggattcaaaaaatggacgcctgtaggtagagtcttgaaatattttccgaatctttcaacaatatatactgtc |
354 |
Q |
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|||||||||| ||| || ||| ||||||| ||||||||||||| ||| ||||| |||| || || |||||||| |||| || | |||||||||||| |
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| T |
42570314 |
atggacgcgagcaattttatcaacaaaagggttcaaaaaatggatgccggtaggaagagatttaaagtattttccatatctctcgatgatatatactgtc |
42570215 |
T |
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| Q |
355 |
tgctccggcac |
365 |
Q |
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|| |||||||| |
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| T |
42570214 |
tgatccggcac |
42570204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 42570523 - 42570489
Alignment:
| Q |
45 |
cataagaagcaagcttaggatccacaatctgcact |
79 |
Q |
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| T |
42570523 |
cataagaagcaagcctaggatccacaatctgcact |
42570489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 42577709 - 42577675
Alignment:
| Q |
45 |
cataagaagcaagcttaggatccacaatctgcact |
79 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
42577709 |
cataggaagcaagcttaggatccacaatctgcact |
42577675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 42608015 - 42607983
Alignment:
| Q |
45 |
cataagaagcaagcttaggatccacaatctgca |
77 |
Q |
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| T |
42608015 |
cataagaagcaagtttaggatccacaatctgca |
42607983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 27871082 - 27871116
Alignment:
| Q |
45 |
cataagaagcaagcttaggatccacaatctgcact |
79 |
Q |
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| T |
27871082 |
cataagaagcaagtttaggatccacaatctgcact |
27871116 |
T |
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