View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6882_high_6 (Length: 326)

Name: NF6882_high_6
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6882_high_6
NF6882_high_6
[»] chr1 (1 HSPs)
chr1 (16-311)||(28470758-28471052)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 28470758 - 28471052
Alignment:
Q  16 ataattaactaagagaaaataaaaacaaacatcaaaccagcataaaaagaattaatggaggtaagaaaaagttttttacaattactcactcaaattacaa 115  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  28470758 ataattaactaaga--aaataaaaacaaacatcaaaccagcataaaaagaattaatgaaggtaagaaaaagttttttacaattattcactcaaattacaa 28470855  T
Q  116 accatgaagatgttcatgcttgcatagtcatgacaatagcattaaaatcctattttccaaaatagaaaacaaaacaaaatccattctactagatatttgt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470856 accatgaagatgttcatgcttgcatagtcatgacaatagcattaaaatcctattttccaaaatagaaaacaaaacaaaatccattctactagatatttgt 28470955  T
Q  216 tctgtaaacaatgcttcaaacacaaaaa-ccagatacaatttctcaaacattagacctttgatgcaattcatgagtattccaccattgatgaacaaa 311  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470956 tctgtaaacaatgcttcaaacacaaaaacccagatacaatttctcaaacattagacctttgatgcaattcatgagtattccaccattgatgaacaaa 28471052  T

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