View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6882_low_1 (Length: 708)

Name: NF6882_low_1
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6882_low_1
NF6882_low_1
[»] chr4 (1 HSPs)
chr4 (24-684)||(35200764-35201428)


Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 24 - 684
Target Start/End: Original strand, 35200764 - 35201428
Alignment:
Q  24 atatctttggtcaacatggatgagagaagaaaattatggagtagaacaaag--tcttttaattacaaatgcaaagtgtgacctcgttgtgtaattcaatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  35200764 atatctttggtcaacatggatgagagaagaaaattatggagtagaacaaagagtcttttaattacaaatgcaaagtgtgacctcgttgtgtaattcaatt 35200863  T
Q  122 gagtcttcttgagatgtaaagagccacatggtggttttttgtccctttcatttggaacttttagtacatcatataaacatattgattgttcttgtttcan 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35200864 gagtcttcttgagatgtaaagagccacatggtggttttttgtccctttcatttggaacttttagtacatcatataaacatattgattgttcttgtttcat 35200963  T
Q  222 nnnnnnnnnnnn-gtttatcattatatacttctgttaatttgtctctccctttatgaataaatactatcttaatagagaaaccatctttattacctaata 320  Q
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35200964 tttttttatttttgtttatcattatatacttctgttaatttgtctctccctttatgaataaatactatcttaatagagaaaccatctttattacctaata 35201063  T
Q  321 tatacgtatgtttatctgtaaaaggtccatgcaattgtcttatattttttgttcatgttattaagatcttgatactaacaacttgaaagaaaa-gaaaat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35201064 tatacgtatgtttatctgtaaaaggtccatgcaattgtcttatattttttgttcatgttattaagatcttgatactaacaacttgaaagaaaaagaaaat 35201163  T
Q  420 gctatnnnnnnncttgacctaagttacattatttttgaattatatactatactaattaaattaaatattagaaaattttgaagtgggattttgccttatt 519  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35201164 gctataaaaaaacttgacctaagttacattatttttgaattatatactatactaattaaattaaatattagaaaaatttgaagtgggattttgccttatt 35201263  T
Q  520 acaacatgcctagggctttgagcaggtcttagggattccctcaatgtatctctctgcacaaaagaatgttacgttggagtatatatgtgggtgtgtgttc 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35201264 acaacatgcctagggctttgagcaggtcttagggattccctcaatgtatctctctgcacaaaagaatgttacgttggagtatatatgtgggtgtgtgttc 35201363  T
Q  620 tttatttttactannnnnnnnnctttattgaaccactcaagattcatcctaatcacgctttacct 684  Q
    |||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  35201364 tttatttttactatttttttttctttattgaaccactcaagattcatcctaatcacgctttacct 35201428  T

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