View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6882_low_10 (Length: 328)
Name: NF6882_low_10
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6882_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 45944909 - 45944611
Alignment:
| Q |
16 |
atgaatacttgtgaaaatgatgaaggacgtatatcaaaaagggtattaacaaagttatgtatgttgatctgttctggatttgtatacggtgaacctcctc |
115 |
Q |
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| T |
45944909 |
atgaatacttgtgaaaatgatgaaggacttatattaaaaagggcattaacaaagttatgtatgttgatctgttctggatttgtatatggtgaacctcctc |
45944810 |
T |
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| Q |
116 |
tttcaaggactaaaacttttccaccttgtgaaagtgttgctgctagtggacaaccacatgttcctccaccaattactatataatcatatgttaagattgg |
215 |
Q |
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| T |
45944809 |
tttcaaggactaaaacttttccaccttgtgaaagtgttgctgctagtggacaaccacatgttcctccaccaattactatataatcatatgttaagattgg |
45944710 |
T |
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| Q |
216 |
aggagcaaatgtggcttctttgataaatgtgtacattggtgctgcattgacacacagaagnnnnnnnnntaaagatcacataaaatgactcataacacca |
315 |
Q |
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| T |
45944709 |
aggagcaaatgtggcttctttgataaatgtgtacattggtgctgcattga--cacagaag-aaaaaaaataaagatcacataaaatgactcataacatca |
45944613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 245
Target Start/End: Complemental strand, 45938133 - 45937928
Alignment:
| Q |
28 |
gaaaatgatgaaggacgtatatcaaaaagggtattaacaaagttatgtatgttgatctgttctggatttgtatacggtgaacctcctctttcaaggacta |
127 |
Q |
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|||||||||||||||| | | ||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45938133 |
gaaaatgatgaaggacttgtgtcagcaagggaattaacaaagttatgtatgttgatctgttctggatttgtatatggtgaacctcctctttcaaggacta |
45938034 |
T |
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| Q |
128 |
aaacttttccaccttgtgaaagtgttgctgctagtggacaaccacatgttcctccaccaattactatataatcatatgttaagattggaggagcaaatgt |
227 |
Q |
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| T |
45938033 |
aaa------------gtgaaagtgttgcggcaagtggacaaccacatgttcctccccctatgactatatagtcatatgttaagattggtggagcaaatgt |
45937946 |
T |
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| Q |
228 |
ggcttctttgataaatgt |
245 |
Q |
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| T |
45937945 |
tgcttctttgataaatgt |
45937928 |
T |
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