View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6882_low_2 (Length: 639)

Name: NF6882_low_2
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6882_low_2
NF6882_low_2
[»] chr4 (1 HSPs)
chr4 (1-631)||(35201407-35202020)


Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 631
Target Start/End: Original strand, 35201407 - 35202020
Alignment:
Q  1 tcatcctaatcacgctttacctctatgtccctttcttggatttcgaatgttcttttttatattccactgcacaattccaattccattattttatcaccca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35201407 tcatcctaatcacgctttacctctatgtccctttcttggatttcgaatgttcttttttatattccactgcacaattccaattccattattttatcaccca 35201506  T
Q  101 aattccatcttagaccaaacccatcacgtgaacctagctacacaattcaattaattaatctaccatatagtattatatcattcttaagtcttaggtcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35201507 aattccatcttagaccaaacccatcacgtgaacctagctacacaattcaattaattaatctaccatatagtattatatcattcttaagtcttaggtcatt 35201606  T
Q  201 taattaaataatattactaatactccaaaacatttgaaataaaatggtaaaagatctctttcaacttaactagatgtcttagtttaaattcggtcatgtg 300  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  35201607 taattaaataatattattaatactccaaaacatttgaaataaaatggtaaaagatctctttcaacttaactagatgtcttagttcgaattcggtcatgtg 35201706  T
Q  301 aatgcaacagtaataacctaccaaaagagagtttcgtcacttattttggttttacccggcttgagggatttatctctgcagttgcatgcagatgataatc 400  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||          
T  35201707 aatgcaacagtaataacctatcaaaagagagtttcgtcacttattttggttttaccaggtttgagggatctatctctgcagttgcatgcggatg------ 35201800  T
Q  401 ggttgaaaaatatatattaaatgtacatatgttcaccttatcat-ctagctagctaggcagtctcatcactctctttgtatactccatttctaaggctat 499  Q
                |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||    
T  35201801 ------------tatattaaatgtacatatgttcaccttatcatgctagctagctaggcagtctcttcactctctttgtatactacatttctaaggccat 35201888  T
Q  500 caagcgagactcaaggcgccaactgctctttgtctgatatctctcatttcaactaactcatagagaccaaaatgtttggtaactgtgttgatgagaaaac 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35201889 caagcgagactcaaggcgccaactgctctttgtctgatatctctcatttcaactaactcatagagaccaaaatgtttggtaactgtgttgatgagaaaac 35201988  T
Q  600 ggtaatcacttgtaacaaattgacacaggttc 631  Q
    ||||||||||||||||||||||||||||||||    
T  35201989 ggtaatcacttgtaacaaattgacacaggttc 35202020  T

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