View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6882_low_21 (Length: 234)

Name: NF6882_low_21
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6882_low_21
NF6882_low_21
[»] chr3 (3 HSPs)
chr3 (1-234)||(50751924-50752157)
chr3 (26-114)||(11870592-11870680)
chr3 (62-128)||(11870692-11870758)
[»] chr2 (3 HSPs)
chr2 (64-233)||(512725-512899)
chr2 (126-206)||(564293-564373)
chr2 (189-233)||(564237-564281)
[»] chr8 (2 HSPs)
chr8 (26-155)||(43798012-43798146)
chr8 (145-233)||(38201793-38201881)
[»] chr4 (5 HSPs)
chr4 (13-210)||(55236655-55236857)
chr4 (13-210)||(14311792-14311994)
chr4 (141-231)||(9789966-9790056)
chr4 (129-210)||(14293721-14293802)
chr4 (129-210)||(14309770-14309851)
[»] chr1 (2 HSPs)
chr1 (104-224)||(8655212-8655339)
chr1 (28-72)||(8655166-8655210)
[»] chr7 (2 HSPs)
chr7 (13-210)||(45715400-45715602)
chr7 (129-233)||(38580255-38580359)
[»] chr6 (1 HSPs)
chr6 (178-233)||(32209320-32209375)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 50752157 - 50751924
Alignment:
Q  1 ggtgtttacttgtcaggtttctcatgttatattcacaattcctcagatattctcccagccaagttacttgctatttatcagggtcttttgttagctaaat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50752157 ggtgtttacttgtcaggtttttcatgttatattcacaattcctcagatattctcccaaccaagttacttgctatttatcagggtcttttgttagctaaat 50752058  T
Q  101 ctatggatattaatgagctcatttgctaattccttgcatagtataaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50752057 ctatggatattaatgagctcatttgctaattccttgcatagtataaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaa 50751958  T
Q  201 acataaaagatttgatctagcaaagcaatatcat 234  Q
    ||||||||||||||||||||||||||||||||||    
T  50751957 acataaaagatttgatctagcaaagcaatatcat 50751924  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 11870592 - 11870680
Alignment:
Q  26 gttatattcacaattcctcagatattctcccagccaagttacttgctatttatcagggtcttttgttagctaaatctatggatattaat 114  Q
    |||||||||| ||||| ||||||||||||| ||   |||||||| ||||||||||||  ||||||||||||||| || | |||||||||    
T  11870592 gttatattcataattcttcagatattctccaagtggagttactttctatttatcaggaccttttgttagctaaaactcttgatattaat 11870680  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 11870692 - 11870758
Alignment:
Q  62 agttacttgctatttatcagggtcttttgttagctaaatctatggatattaatgagctcatttgcta 128  Q
    |||||||| ||||||||||||  ||||||||||||||| || | ||||||||||| ||| |||||||    
T  11870692 agttactttctatttatcaggaccttttgttagctaaaactcttgatattaatgatctcgtttgcta 11870758  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 64 - 233
Target Start/End: Original strand, 512725 - 512899
Alignment:
Q  64 ttacttgctatttatcagggtcttttgttagctaaatctatggatattaatgagctcatttg-----ctaattccttgcatagtataaatctcataaaag 158  Q
    |||||| |||| ||| |||||||||||||||||||| | ||||||||| |||||||  |||      |||| ||||| ||||||||||||||||| ||||    
T  512725 ttactttctatctattagggtcttttgttagctaaaacgatggatattgatgagctggttttttattctaactccttacatagtataaatctcattaaag 512824  T
Q  159 gtcaatccatgaagtaccacgttcatgctattttgattcaaaacataaaagatttgatctagcaaagcaatatca 233  Q
    ||| | ||||||||||||| || |||| | ||||||||||| |||||||||| |||||| ||||||| |||||||    
T  512825 gtccacccatgaagtaccatgtccatgttgttttgattcaagacataaaagagttgatcgagcaaagtaatatca 512899  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 564373 - 564293
Alignment:
Q  126 ctaattccttgcatagtataaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaaacataa 206  Q
    |||| ||||| ||||||||||||||||| ||||||| | ||||||||||||| || |||| | ||||||||||| ||||||    
T  564373 ctaactccttacatagtataaatctcattaaaggtccacccatgaagtaccatgtccatgttgttttgattcaagacataa 564293  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 564281 - 564237
Alignment:
Q  189 ttttgattcaaaacataaaagatttgatctagcaaagcaatatca 233  Q
    ||||||||||| |||||||||| |||||| ||||||| |||||||    
T  564281 ttttgattcaagacataaaagagttgatcgagcaaagtaatatca 564237  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 43798146 - 43798012
Alignment:
Q  26 gttatattcacaattcctcagatattctcccagccaagttacttgctatttatcagggtcttttgttagctaaatctatggatattaatgagctcatttg 125  Q
    |||||||||||||||  ||| ||||||||| |||  ||||| |||||||||||||||||||| ||||||||||| || |||||||||| ||||||| |||    
T  43798146 gttatattcacaatttttcaaatattctccaagctgagttaattgctatttatcagggtcttctgttagctaaaactctggatattaacgagctcaattg 43798047  T
Q  126 -----ctaattccttgcatagtataaatctcataa 155  Q
         || ||||||| | |||||||||||||||||    
T  43798046 ttattctgattccttacgtagtataaatctcataa 43798012  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 38201881 - 38201793
Alignment:
Q  145 aaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaaacataaaagatttgatctagcaaagcaatatca 233  Q
    ||||||||||||||||  |||||| ||||  || ||||| | | ||||||||||| |||||||  | |||||| |||||| ||||||||    
T  38201881 aaatctcataaaaggttcatccataaagtttcatgttcacgatgttttgattcaagacataaagaaattgatcgagcaaaacaatatca 38201793  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 55236857 - 55236655
Alignment:
Q  13 tcaggtttctcatgttatattcacaattcctcagatattctcccagccaagttacttgctatttatcagggtcttttgttagctaaatctatggatatta 112  Q
    ||||| || ||| |||||||| |||||||||| |||||||| | ||   |||||||||| ||||||||||| || ||| |||| ||||| ||| | |||     
T  55236857 tcaggattttcaggttatatttacaattcctctgatattcttcaagttgagttacttgccatttatcagggcctcttgctagccaaatcgatgaacattg 55236758  T
Q  113 atgagctcatttgcta-----attccttgcatagtataaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaaacataaa 207  Q
    |||  ||  |||||||     ||||||| ||| |||||||||||||||||||||   | ||||| ||||| ||||||||| | ||||||||| |||||||    
T  55236757 atgcacttgtttgctactctgattccttacatggtataaatctcataaaaggtcctcctatgaaataccatgttcatgctgtgttgattcaagacataaa 55236658  T
Q  208 aga 210  Q
    |||    
T  55236657 aga 55236655  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 14311792 - 14311994
Alignment:
Q  13 tcaggtttctcatgttatattcacaattcctcagatattctcccagccaagttacttgctatttatcagggtcttttgttagctaaatctatggatatta 112  Q
    ||||| || ||| |||||||||| |||||||| |||||||||| ||   |||||||||| ||||| ||||| || ||| |||| ||||| ||| | |||     
T  14311792 tcaggattttcaggttatattcataattcctctgatattctccaagttgagttacttgccatttaccagggcctcttgctagccaaatcgatgaacattg 14311891  T
Q  113 atgagctcatttgcta-----attccttgcatagtataaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaaacataaa 207  Q
    ||| | |  |||||||     ||||||| ||| |||||||||||||||||||||   | ||||| ||||| ||||||| | | ||||||||| |||||||    
T  14311892 atgcgattgtttgctactcttattccttacatggtataaatctcataaaaggtcttcctatgaaataccatgttcatgttgtgttgattcaagacataaa 14311991  T
Q  208 aga 210  Q
    |||    
T  14311992 aga 14311994  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 9789966 - 9790056
Alignment:
Q  141 gtataaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaaacataaaagatttgatctagcaaagcaatat 231  Q
    ||||| ||||||||||||||  | ||||||| |  || ||||||||  ||||||||||| ||||||||||||||||| |||||| ||||||    
T  9789966 gtatagatctcataaaaggtacacccatgaaatttcatgttcatgcagttttgattcaagacataaaagatttgatcgagcaaaacaatat 9790056  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 14293721 - 14293802
Alignment:
Q  129 attccttgcatagtataaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaaacataaaaga 210  Q
    ||||||| ||| |||||||||||||||||||||   | ||||| ||||| ||||||| | | ||||||||| ||||||||||    
T  14293721 attccttacatggtataaatctcataaaaggtcctcctatgaaataccatgttcatgttgtgttgattcaagacataaaaga 14293802  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 14309770 - 14309851
Alignment:
Q  129 attccttgcatagtataaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaaacataaaaga 210  Q
    ||||||| ||| |||||||||||||||||||||   | ||||| ||||| ||||||| | | ||||||||| ||||||||||    
T  14309770 attccttacatggtataaatctcataaaaggtcctcctatgaaataccatgttcatgttgtgttgattcaagacataaaaga 14309851  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 8655212 - 8655339
Alignment:
Q  104 tggatattaatgagctcatttgcta-----attccttgcatagtataaatctcataaaag--gtcaatccatgaagtaccacgttcatgctattttgatt 196  Q
    ||||||||||||||||| |||||||     ||||||| |||| ||||||||||||||||   ||| ||  ||||||||||| ||||||||| ||||||||    
T  8655212 tggatattaatgagctcgtttgctattctgattccttacatattataaatctcataaaaaaagtccatttatgaagtaccatgttcatgctgttttgatt 8655311  T
Q  197 caaaacataaaagatttgatctagcaaa 224  Q
     || | |||||| |||||||| ||||||    
T  8655312 aaagatataaaaaatttgatcgagcaaa 8655339  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 8655166 - 8655210
Alignment:
Q  28 tatattcacaattcctcagatattctcccagccaagttacttgct 72  Q
    |||||||||||||| | ||||||||||| |||| |||||||||||    
T  8655166 tatattcacaattctttagatattctccaagccgagttacttgct 8655210  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 45715602 - 45715400
Alignment:
Q  13 tcaggtttctcatgttatattcacaattcctcagatattctcccagccaagttacttgctatttatcagggtcttttgttagctaaatctatggatatta 112  Q
    ||||| || ||| |||||||||||||||||||  ||||||||| |||  |||||||||  ||||| ||||  ||  || |||| ||||| ||| | |||     
T  45715602 tcaggattttcaggttatattcacaattcctcttatattctccaagctgagttacttgacatttaccaggacctcatgctagcaaaatcgatgaacattg 45715503  T
Q  113 atgagctcatttgcta-----attccttgcatagtataaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaaacataaa 207  Q
    |||||||  |||||||     ||||||| ||| |||||||||||||||||||||   | ||||| || || ||||||| | | ||||||||| |||||||    
T  45715502 atgagcttgtttgctactttgattccttacatggtataaatctcataaaaggtcctcctatgaaatatcatgttcatgatgtattgattcaagacataaa 45715403  T
Q  208 aga 210  Q
    |||    
T  45715402 aga 45715400  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 38580255 - 38580359
Alignment:
Q  129 attccttgcatagtataaatctcataaaaggtcaatccatgaagtaccacgttcatgctattttgattcaaaacataaaagatttgatctagcaaagcaa 228  Q
    ||||||| ||| ||||||||||||||||||  |   |||| || ||||| ||||||| | ||||||||||| |||| |||||||| ||  |||||| |||    
T  38580255 attccttacatggtataaatctcataaaagaccctcccataaaataccatgttcatgttgttttgattcaagacatgaaagatttaatagagcaaaacaa 38580354  T
Q  229 tatca 233  Q
    |||||    
T  38580355 tatca 38580359  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 32209375 - 32209320
Alignment:
Q  178 cgttcatgctattttgattcaaaacataaaagatttgatctagcaaagcaatatca 233  Q
    |||||||| | ||||||||||| ||||||||||| ||||| |||||| ||||||||    
T  32209375 cgttcatgttgttttgattcaagacataaaagatatgatcgagcaaaacaatatca 32209320  T

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