View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6882_low_3 (Length: 507)
Name: NF6882_low_3
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6882_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 40852939 - 40852446
Alignment:
| Q |
1 |
tatgaaattgagttcttatctttatatttggtttgttagagagtaagactatattaatataaattttgtaaaataaagaaccatttttaaacnnnnnnnt |
100 |
Q |
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| T |
40852939 |
tatgaaattgagttctcatctttatatttggtttgttagagagtaagactatattaatataaattttgtaaaataaagaaccatttttaaacaaaaaaat |
40852840 |
T |
|
| Q |
101 |
ggagcatattgttatataacttttgtggtccttttctatagcacaatcttttttcttccattcatttatcaatttatggacttctacttgttagccacca |
200 |
Q |
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| T |
40852839 |
ggagcatattgttatataacttttgtggtccttttctatagcacaatcttttttcttccattcatttatcaatttatggacttctacttgttagccacca |
40852740 |
T |
|
| Q |
201 |
atacaagatacttgtcatggatttatccttacacatttcctttttgagcaattatttacaagtaaactatatatataactaaataggaagaaaaatatat |
300 |
Q |
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| T |
40852739 |
atacaagatacttgtcatggatttatccttacacatttcctttttgagcaattatttacaagtaaactatatatataactaaataggaagaaaaataaat |
40852640 |
T |
|
| Q |
301 |
caaaagtaagtgctcataaaagcatatattcagttataggtctgcttcagtgtatgttgttagttttgagtattgagcactcaattatgatgaaagtgct |
400 |
Q |
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| T |
40852639 |
caaaagtaagtgctcataaaagcatatattcagttataggtctgcttcagtgtatgttgttagttttgagtattgagcactcaattatgatgaaagtgct |
40852540 |
T |
|
| Q |
401 |
agttcagcccaagctaaagatgatgacttgagctccacacttatcgatgtgtcgattctgctttcgagcatgctgcacaactcttgcattgatg |
494 |
Q |
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| T |
40852539 |
agttcagcccaagctaaagatgatgacttgagctccacacttatcgatgtgtcgattctgctttcgagcatgctgcacaactcttgcattgatg |
40852446 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 494
Target Start/End: Original strand, 2791823 - 2791895
Alignment:
| Q |
422 |
gatgacttgagctccacacttatcgatgtgtcgattctgctttcgagcatgctgcacaactcttgcattgatg |
494 |
Q |
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||||||||||| ||| | |||| ||||||||||||||||| || |||||||||||||| |||||||| |||| |
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| T |
2791823 |
gatgacttgagatccgcgcttactgatgtgtcgattctgctctccagcatgctgcacaattcttgcatagatg |
2791895 |
T |
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