View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6882_low_4 (Length: 492)
Name: NF6882_low_4
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6882_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 231 - 481
Target Start/End: Original strand, 21741739 - 21741986
Alignment:
| Q |
231 |
ccaaacaaataatgggcaacaggcccaactatatgaggtttatatacagtgaggattgctgtagtaattgtgttagaaacagtgtcagctcaatatcttt |
330 |
Q |
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| T |
21741739 |
ccaaacaaataatgggcaacaggcccaactatatgaggtttatatacagtgaggattgctgtagtaattgtgttagaaacagtgtcagctcaatatcttt |
21741838 |
T |
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| Q |
331 |
gtttttagaacttttcaaactacacttcttgcaattgttgttcttttctttcttatcttccccctttttcttcgatgtagagtagagtagagtagtgggc |
430 |
Q |
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| T |
21741839 |
gtttttagaacttttcaaactacacttcttgcaattgttgttcttttctttcttatcttccccctttttcttcgatgtagagtagagtagagtagtgggc |
21741938 |
T |
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| Q |
431 |
caatgacctgaccttattcttctacaacaactacctaccaccaccaccaaa |
481 |
Q |
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| T |
21741939 |
caatgacctgaccttattcttct---acaactacctaccaccaccaccaaa |
21741986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 21741539 - 21741697
Alignment:
| Q |
31 |
gggggtagtatcaaactatcaacaattcaacatacattttgaaactgcaaactgagtttttgttgacaccttggtaatttgtttctcttgcagaaataca |
130 |
Q |
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| T |
21741539 |
gggggtagtatcaaactatcaacaattcaacatacattttgaaactgcaaactgagtttttgttgacaccttggtaatttgtttctcttgcagaaataca |
21741638 |
T |
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| Q |
131 |
tgcacgaggatctcaattgatgtgtcaaacctgtgaagacttaggatttggttcagaca |
189 |
Q |
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| T |
21741639 |
tgcacgaggatctcaattgatgtgtcaaacctgtgaagacttaggatttggttcagaca |
21741697 |
T |
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