View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6882_low_5 (Length: 469)
Name: NF6882_low_5
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6882_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 21264394 - 21264764
Alignment:
| Q |
16 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21264394 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
21264493 |
T |
|
| Q |
116 |
aaagccgtatgcagcagaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgc |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21264494 |
aaagccgtatgcagcaaaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgc |
21264593 |
T |
|
| Q |
216 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21264594 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatat |
21264693 |
T |
|
| Q |
316 |
agaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
21264694 |
agaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21264764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 198 - 386
Target Start/End: Original strand, 21259995 - 21260183
Alignment:
| Q |
198 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21259995 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg |
21260094 |
T |
|
| Q |
298 |
tttttcacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
386 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
21260095 |
ttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21260183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 47804966 - 47805337
Alignment:
| Q |
16 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47804966 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
47805065 |
T |
|
| Q |
116 |
aaagccgtatgcagcagaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgc |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47805066 |
aaagccgtatgcagcaaaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgc |
47805165 |
T |
|
| Q |
216 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47805166 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatat |
47805265 |
T |
|
| Q |
316 |
agaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgacaa |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
47805266 |
agaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacaa |
47805337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 198 - 378
Target Start/End: Original strand, 47800566 - 47800746
Alignment:
| Q |
198 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47800566 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaatagg |
47800665 |
T |
|
| Q |
298 |
tttttcacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactctatca |
378 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47800666 |
ttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatca |
47800746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 34167767 - 34167698
Alignment:
| Q |
142 |
caactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagtt |
211 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
34167767 |
caactcactagacaagttgggtattagaaatatctactcaccaacttgagggggagtgttggcatgagtt |
34167698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 6847537 - 6847908
Alignment:
| Q |
16 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6847537 |
tgtggaagtagatcggcggtttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgagcaccagttagcagatatactcaca |
6847636 |
T |
|
| Q |
116 |
aaagccgtatgcagcagaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgc |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6847637 |
aaagccgtatgcagcaaaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagcgttggcgtgagttatgc |
6847736 |
T |
|
| Q |
216 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6847737 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatat |
6847836 |
T |
|
| Q |
316 |
agaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgacaa |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
6847837 |
agaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacaa |
6847908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 197 - 378
Target Start/End: Original strand, 6843115 - 6843296
Alignment:
| Q |
197 |
gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatag |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6843115 |
gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatag |
6843214 |
T |
|
| Q |
297 |
gtttttcacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactctatca |
378 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6843215 |
attttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatca |
6843296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 5860783 - 5860714
Alignment:
| Q |
142 |
caactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagtt |
211 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
5860783 |
caactcactagacaagttgggtattagaaatatctactcaccaacttgagggggagtgttggcatgagtt |
5860714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 38460251 - 38460058
Alignment:
| Q |
16 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
38460251 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaagatcaattagcagatatactcaca |
38460152 |
T |
|
| Q |
116 |
aaagccgtatgcagcagaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
209 |
Q |
| |
|
||||| ||||| |||||| |||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
38460151 |
aaagctgtatgtagcagagacttcttcaactcacttgacaagttgggtattcgagatctctatgcaccaacttgagggggagtgttggtgtgag |
38460058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 18043522 - 18043375
Alignment:
| Q |
62 |
ataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactttttcaactcacttgacaagttgg |
161 |
Q |
| |
|
|||||||| |||||||||||||||||| | || || ||| |||||||||||||||||| ||||| | |||| |||||| |||||||||||| ||||||| |
|
|
| T |
18043522 |
ataattcagtttccatttgttaaatctaaagatcaattatcagatatactcacaaaagttgtatgtaccagagacttttacaactcacttgataagttgg |
18043423 |
T |
|
| Q |
162 |
gcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
18043422 |
gcattcaagatctctgtgcaccaacttgaggggaagtgttggtgtgag |
18043375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 15646335 - 15646266
Alignment:
| Q |
142 |
caactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagtt |
211 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
15646335 |
caactcactagacaagttgggtattagaaatatctactcaccaacttgagggggagtgttggcatgagtt |
15646266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 522561 - 522497
Alignment:
| Q |
145 |
ctcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
209 |
Q |
| |
|
||||||||||||||| |||||| | || ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
522561 |
ctcacttgacaagttaggcattaatgatatctatgcaccaacttgagggggagtgttggtgtgag |
522497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 31289581 - 31289542
Alignment:
| Q |
425 |
acaagagccataaagtgttgttgctgctacacaggttctg |
464 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
31289581 |
acaagagccatacagtgttgtttctgctacacaggttctg |
31289542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 26853986 - 26853949
Alignment:
| Q |
425 |
acaagagccataaagtgttgttgctgctacacaggttc |
462 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
26853986 |
acaagagccatacagtgttgttgctgctacacaagttc |
26853949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 466
Target Start/End: Original strand, 29269788 - 29269829
Alignment:
| Q |
425 |
acaagagccataaagtgttgttgctgctacacaggttctgct |
466 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
29269788 |
acaagagccatacagtgttgttgctgctacacaagttctgct |
29269829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University