View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6882_low_7 (Length: 383)
Name: NF6882_low_7
Description: NF6882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6882_low_7 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: scaffold0136 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 7202 - 6927
Alignment:
| Q |
18 |
actataatcatctttgtccacccaaacccagaaaaaatcaacaccaacattttaattttcacacacatacacnnnnnnnccaactctttcttcaaccaaa |
117 |
Q |
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| T |
7202 |
actataatcatctttgtccacccaaacccagaaaaaatcaacaccaacatttttattttcacacacataaacaaaaaaaccaactttttcttcaaccaaa |
7103 |
T |
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| Q |
118 |
cagttacacaaccttctttgtttcacacatgtaacataacatgacttaacttcattgtttctttttctgtcttaaacaaaaacaaccctttaacttcaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7102 |
cagttacacaaccttctttgtttcacacatgtaacataacatgacttaacttcattgtttctttttctgtcttaaacaaaaacaaccctttaacttcaat |
7003 |
T |
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| Q |
218 |
ggctgaatcaatcaaacatgttacacatttaaacatcaaaagcttctcttctattctcaaaaccagaaaaacaatc |
293 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7002 |
ggctgaatcaaccaaacatgttacacacttaaacatcaaaagcttctcttctgttctcaaaaccagaaaaacaatc |
6927 |
T |
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