View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_high_16 (Length: 248)
Name: NF6883_high_16
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15190302 - 15190531
Alignment:
| Q |
1 |
ctttaaacggtctctttaccgtgcccttgcattctttccaccctttgctggtcgtctcgaaattacagaacacgaagataacactatctcgtgttccctt |
100 |
Q |
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| T |
15190302 |
ctttaaacagtctctttcctgtgcccttgcattctttccaccctttactggtcgtctcgaaattacagaacacgaagataacactatttcgtgttccctt |
15190401 |
T |
|
| Q |
101 |
gcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttccgttttccact |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15190402 |
gcatgcaaaaatgctggtgcactctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttcctttttccact |
15190501 |
T |
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| Q |
201 |
ccttctttccacttaacggagttataaact |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
15190502 |
ccttctttccacttaacggagttataaact |
15190531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 15744112 - 15744223
Alignment:
| Q |
24 |
cccttgcattctttccaccctttgctggtcgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcact |
123 |
Q |
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|||||| ||| |||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||| | | |||||||||| ||||||||| |
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| T |
15744112 |
cccttgaattttttccaccctttactggtcgtctcaaaatcaaggaacacgaagataacactatctcgtgttccatcacgtgcaacaatgttggtgcact |
15744211 |
T |
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| Q |
124 |
ctttgttcatgc |
135 |
Q |
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| T |
15744212 |
atttgttcatgc |
15744223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 8935268 - 8935396
Alignment:
| Q |
53 |
cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat |
152 |
Q |
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| T |
8935268 |
cgtctcaaaataacggaataccaagacaaaactgtctcgtgctccgttatatgcaacaatgcaggtgtactctttgtccatgccagatcagagaatactt |
8935367 |
T |
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| Q |
153 |
gtgttgccgacattctaggatccacctac |
181 |
Q |
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| T |
8935368 |
gtgttgctgacattctagaacccacctac |
8935396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 8934324 - 8934455
Alignment:
| Q |
50 |
ggtcgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaaca |
149 |
Q |
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| T |
8934324 |
ggtcgtctcaaaataacggaataccaagacaaaactgtctcgtgctccgttatatgcaacaatgcagatgtactctttgtccatgccagatcagagaata |
8934423 |
T |
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| Q |
150 |
catgtgttgccgacattctaggatccacctac |
181 |
Q |
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| T |
8934424 |
cttgtgttgctgacattctagaacccacctac |
8934455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 8929922 - 8930000
Alignment:
| Q |
103 |
atgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctac |
181 |
Q |
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| T |
8929922 |
atgcaacaatgcagttgtactctttgttcatgccagatcagagaatacttgtgttgctgacattctagaacccacctac |
8930000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 7638019 - 7637891
Alignment:
| Q |
53 |
cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat |
152 |
Q |
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|||||| |||| || |||||| ||| |||||| | ||||||||| || |||||||||||| |||| ||||||||| ||||| ||||||||| || | |
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| T |
7638019 |
cgtctcaaaataacggaacacagagacaacactgtttcgtgttccgttatatgcaacaatgcaggtgtactctttgtccatgccgcagcagagaatactt |
7637920 |
T |
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| Q |
153 |
gtgttgccgacattctaggatccacctac |
181 |
Q |
| |
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||||||| ||||| |||| | |||||||| |
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| T |
7637919 |
gtgttgcagacatcctagaacccacctac |
7637891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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