View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_high_18 (Length: 240)
Name: NF6883_high_18
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_high_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 41511691 - 41511468
Alignment:
| Q |
17 |
agaatgaaagtcaattgaatagaagagaaaacctagaggcgtttgtgtttagtagagaaagtgaagaagagtgtttggtagagatgagatgagaaaacat |
116 |
Q |
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| T |
41511691 |
agaatgaaagtcaattgaatagaagagaaaacctagaggcgtttgtgtttagtagagaaagtgaagaagagtgtttggtagagatgagatgagaaaacat |
41511592 |
T |
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| Q |
117 |
ggtgttgcgttgcggctgatgaaaatgttttagggcaaatttaggagaatgaaaaaagataggtatatatagttttcgggaaatcatcttatgtcttctc |
216 |
Q |
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| T |
41511591 |
ggtgttgcgttgcggctgatgaaaatgttttagggcaaatttaggagaatgaaaaaagataggtatatatagttttcgggaaatcatcttatgtcttctc |
41511492 |
T |
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| Q |
217 |
atatagtccgtccgtttcgaatat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
41511491 |
atatagtccgtccgtttcgaatat |
41511468 |
T |
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