View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_high_20 (Length: 235)
Name: NF6883_high_20
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 26618538 - 26618339
Alignment:
| Q |
21 |
aacacaagtcatgtggaccgnnnnnnnttgaggatataataatgtagaaaaagatgaagaagaatattaatgtgatgaaattgaatttgaagattataca |
120 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26618538 |
aacacaagtcatgtggaccgaaaaaaattgaagatataataatgtagaaaaagatgaagaagaatattaatgtgatgaaattgaatttgaagattataca |
26618439 |
T |
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| Q |
121 |
agttgaaactaannnnnnntatatagtatttattagttgttgttcttcccttgagtatttgaactttccgaagttataactactccagatgctgtctctg |
220 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26618438 |
agttgaaactaagggggggtatatagtatttattagttgttgttcttcccttgagtatttgaactttccgaagttataactactccagatgctgtctctg |
26618339 |
T |
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