View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_high_23 (Length: 223)
Name: NF6883_high_23
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 54778834 - 54778627
Alignment:
| Q |
1 |
ctcactgtaatgttgttttcttttatgaaaaacatat--tttatgctcttacccagagatgcttctatatacccgtcacccgtgtatttggtgtgcttct |
98 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
54778834 |
ctcactgtaatgttgttttcttttatgaaaaacatatattttatgctcttatccagagatgcttctatatacccgt-------gtatttggtgtgcttct |
54778742 |
T |
|
| Q |
99 |
ttgaatttgttctctatcgggcatctgcagatgtttgagacaaattcctccgcaatttaaaatttgttgtttagaatcacaccattccagaaatcaaact |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54778741 |
ttgaatttgttctctatcgggcatctgcagatgtttgagacaaattcctccgcaatttaaaatttgttgtttagaat--caccattccagaaatcaaact |
54778644 |
T |
|
| Q |
199 |
gtcgatcacaggttctg |
215 |
Q |
| |
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|||||||||| |||||| |
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| T |
54778643 |
gtcgatcacaagttctg |
54778627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 54790311 - 54790518
Alignment:
| Q |
1 |
ctcactgtaatgttgttttcttttatgaaaaacatat--tttatgctcttacccagagatgcttctatatacccgtcacccgtgtatttggtgtgcttct |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54790311 |
ctcactgtaatgttgttttcttttatgaaaaacatatattttatgctcttatccagagatgcttctatataccc-------gtgtatttggtgtgcttct |
54790403 |
T |
|
| Q |
99 |
ttgaatttgttctctatcgggcatctgcagatgtttgagacaaattcctccgcaatttaaaatttgttgtttagaatcacaccattccagaaatcaaact |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54790404 |
ttgaatttgttctctatcgggcatctgcagatgtttgagacaaattcctccgcaatttaaaatttgttgtttagaat--caccattccagaaatcaaact |
54790501 |
T |
|
| Q |
199 |
gtcgatcacaggttctg |
215 |
Q |
| |
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|||||||||| |||||| |
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| T |
54790502 |
gtcgatcacaagttctg |
54790518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 52282973 - 52283180
Alignment:
| Q |
1 |
ctcactgtaatgttgttttcttttatgaaaaacatat--tttatgctcttacccagagatgcttctatatacccgtcacccgtgtatttggtgtgcttct |
98 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| ||||||| |||| | |||||||||||| |||||| || ||||||||||||||||| |
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| T |
52282973 |
ctcactataatgttgttttcttttatgtaaaacatatattttatgcccttatcgagagatgcttctttatacctgt-------gtatttggtgtgcttct |
52283065 |
T |
|
| Q |
99 |
ttgaatttgttctctatcgggcatctgcagatgtttgagacaaattcctccgcaatttaaaatttgttgtttagaatcacaccattccagaaatcaaact |
198 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| | |
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| T |
52283066 |
ttgaatttgttctctatcgggcatctgcaaatgtttgagacaaattcctccgcaatttaaaatttgttgtttagaat--caccattccaaaagtcaaatt |
52283163 |
T |
|
| Q |
199 |
gtcgatcacaggttctg |
215 |
Q |
| |
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||| || ||| |||||| |
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|
| T |
52283164 |
gtcaatgacaagttctg |
52283180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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