View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6883_high_5 (Length: 523)

Name: NF6883_high_5
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6883_high_5
NF6883_high_5
[»] chr1 (1 HSPs)
chr1 (1-523)||(14249227-14249749)


Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 14249227 - 14249749
Alignment:
Q  1 aaagtaaggcaaaagctcaccaacagctatgccaaattcctaaccatggccacttcaaaaggaccccaatcccttcaataatgctcaattggaggcaaag 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14249227 aaagtaaggcaaaagctcaccaacagccatgccaaattcctaaccatggccacttcaaaaggaccccaatcccttcaataatgctcaattggaggcaaag 14249326  T
Q  101 aagcatgaaattctgaaagtaatcaaactccaataaaattggagcaataattcatcatcagttaacacattttgcttattaacttaagtctatgatatga 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14249327 aagcatgaaattctgaaaataatcaaactccaataaaattggagcaataattcatcatcagttaacacattttgctcattaacttaagtctatgatatga 14249426  T
Q  201 atacccaaactttcactctcaatcaggaaagtaaaagtcataaaaattcaaaacccaccaggaaaaagaaacagaagcaacaactcaactcatcactccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14249427 atacccaaactttcactctcaatcaggaaagtaaaagtcataaaaattcaaaacccaccaggaaaaagaaacagaagcaacaactcaactcatcactccc 14249526  T
Q  301 ggttcgatcttcacattccattctgttccattatgctcgcatttgcataccaatcaagcttcaatcactagttattcatcatccatatgctttccttcct 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14249527 ggttcgatcttcacattccattctgttccattacgctcgcatttgcataccaatcaagcttcaatcactagttattcatcatccatatgctttccttcct 14249626  T
Q  401 tcaatcactaaacaaataattcaccatattctaaaaccctaatcagttttcccacctaggaaaaccctaactctaattgaactcctcaattcaaggactt 500  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14249627 tcaatcactaaacaaataattcaccatcttctaaaaccctaatcagttttcccacctaggaaaaccctaactctaattgaactcctcaattcaaggactt 14249726  T
Q  501 catcactcaaaaataacaataac 523  Q
    |||||||||||||||||||||||    
T  14249727 catcactcaaaaataacaataac 14249749  T

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